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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-100022457-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=100022457&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 100022457,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000533028.8",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.959G>A",
"hgvs_p": "p.Gly320Glu",
"transcript": "NM_012243.3",
"protein_id": "NP_036375.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 325,
"cds_start": 959,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1144,
"cdna_end": null,
"cdna_length": 14321,
"mane_select": "ENST00000533028.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.959G>A",
"hgvs_p": "p.Gly320Glu",
"transcript": "ENST00000533028.8",
"protein_id": "ENSP00000433849.1",
"transcript_support_level": 1,
"aa_start": 320,
"aa_end": null,
"aa_length": 325,
"cds_start": 959,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1144,
"cdna_end": null,
"cdna_length": 14321,
"mane_select": "NM_012243.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*43G>A",
"hgvs_p": null,
"transcript": "ENST00000638336.1",
"protein_id": "ENSP00000491145.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2438,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ENSG00000283761",
"gene_hgnc_id": null,
"hgvs_c": "c.753+7037G>A",
"hgvs_p": null,
"transcript": "ENST00000639037.1",
"protein_id": "ENSP00000492745.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 713,
"cds_start": -4,
"cds_end": null,
"cds_length": 2142,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.1085G>A",
"hgvs_p": "p.Gly362Glu",
"transcript": "NM_001271685.2",
"protein_id": "NP_001258614.1",
"transcript_support_level": null,
"aa_start": 362,
"aa_end": null,
"aa_length": 367,
"cds_start": 1085,
"cds_end": null,
"cds_length": 1104,
"cdna_start": 1105,
"cdna_end": null,
"cdna_length": 14282,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.1085G>A",
"hgvs_p": "p.Gly362Glu",
"transcript": "ENST00000370153.6",
"protein_id": "ENSP00000359172.1",
"transcript_support_level": 5,
"aa_start": 362,
"aa_end": null,
"aa_length": 367,
"cds_start": 1085,
"cds_end": null,
"cds_length": 1104,
"cdna_start": 1186,
"cdna_end": null,
"cdna_length": 5708,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.959G>A",
"hgvs_p": "p.Gly320Glu",
"transcript": "NM_001438725.1",
"protein_id": "NP_001425654.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 325,
"cds_start": 959,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1243,
"cdna_end": null,
"cdna_length": 14420,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.959G>A",
"hgvs_p": "p.Gly320Glu",
"transcript": "ENST00000427993.7",
"protein_id": "ENSP00000414947.2",
"transcript_support_level": 5,
"aa_start": 320,
"aa_end": null,
"aa_length": 325,
"cds_start": 959,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1260,
"cdna_end": null,
"cdna_length": 2062,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.959G>A",
"hgvs_p": "p.Gly320Glu",
"transcript": "ENST00000465289.6",
"protein_id": "ENSP00000418527.2",
"transcript_support_level": 5,
"aa_start": 320,
"aa_end": null,
"aa_length": 325,
"cds_start": 959,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1265,
"cdna_end": null,
"cdna_length": 5696,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.836G>A",
"hgvs_p": "p.Gly279Glu",
"transcript": "NM_001437717.1",
"protein_id": "NP_001424646.1",
"transcript_support_level": null,
"aa_start": 279,
"aa_end": null,
"aa_length": 284,
"cds_start": 836,
"cds_end": null,
"cds_length": 855,
"cdna_start": 1021,
"cdna_end": null,
"cdna_length": 14198,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.836G>A",
"hgvs_p": "p.Gly279Glu",
"transcript": "ENST00000640732.1",
"protein_id": "ENSP00000492771.1",
"transcript_support_level": 5,
"aa_start": 279,
"aa_end": null,
"aa_length": 284,
"cds_start": 836,
"cds_end": null,
"cds_length": 855,
"cdna_start": 987,
"cdna_end": null,
"cdna_length": 1777,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.962G>A",
"hgvs_p": "p.Gly321Glu",
"transcript": "XM_011541135.4",
"protein_id": "XP_011539437.1",
"transcript_support_level": null,
"aa_start": 321,
"aa_end": null,
"aa_length": 326,
"cds_start": 962,
"cds_end": null,
"cds_length": 981,
"cdna_start": 982,
"cdna_end": null,
"cdna_length": 14159,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "n.*765G>A",
"hgvs_p": null,
"transcript": "ENST00000370155.9",
"protein_id": "ENSP00000359174.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2454,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "n.*471G>A",
"hgvs_p": null,
"transcript": "ENST00000639148.1",
"protein_id": "ENSP00000491383.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "n.*561G>A",
"hgvs_p": null,
"transcript": "ENST00000640178.1",
"protein_id": "ENSP00000491771.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2446,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "n.*308G>A",
"hgvs_p": null,
"transcript": "ENST00000640360.1",
"protein_id": "ENSP00000491598.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4437,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*15G>A",
"hgvs_p": null,
"transcript": "NM_001438728.1",
"protein_id": "NP_001425657.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 269,
"cds_start": -4,
"cds_end": null,
"cds_length": 810,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14187,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*15G>A",
"hgvs_p": null,
"transcript": "ENST00000640715.1",
"protein_id": "ENSP00000492801.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 269,
"cds_start": -4,
"cds_end": null,
"cds_length": 810,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1989,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*15G>A",
"hgvs_p": null,
"transcript": "NM_001437713.1",
"protein_id": "NP_001424642.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*15G>A",
"hgvs_p": null,
"transcript": "ENST00000639221.1",
"protein_id": "ENSP00000492169.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1032,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*43G>A",
"hgvs_p": null,
"transcript": "NM_001271684.2",
"protein_id": "NP_001258613.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14068,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "c.*43G>A",
"hgvs_p": null,
"transcript": "NM_001438729.1",
"protein_id": "NP_001425658.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 179,
"cds_start": -4,
"cds_end": null,
"cds_length": 540,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13945,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35A3",
"gene_hgnc_id": 11023,
"hgvs_c": "n.*765G>A",
"hgvs_p": null,
"transcript": "ENST00000370155.9",
"protein_id": "ENSP00000359174.5",
"transcript_support_level": 5,
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{
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{
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{
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{
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],
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}
],
"message": null
}