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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-161171045-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=161171045&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 161171045,
      "ref": "C",
      "alt": "T",
      "effect": "stop_gained",
      "transcript": "ENST00000367999.9",
      "consequences": [
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1303C>T",
          "hgvs_p": "p.Gln435*",
          "transcript": "NM_001122764.3",
          "protein_id": "NP_001116236.1",
          "transcript_support_level": null,
          "aa_start": 435,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1303,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": 1558,
          "cdna_end": null,
          "cdna_length": 1733,
          "mane_select": "ENST00000367999.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1303C>T",
          "hgvs_p": "p.Gln435*",
          "transcript": "ENST00000367999.9",
          "protein_id": "ENSP00000356978.4",
          "transcript_support_level": 1,
          "aa_start": 435,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1303,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": 1558,
          "cdna_end": null,
          "cdna_length": 1733,
          "mane_select": "NM_001122764.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1303C>T",
          "hgvs_p": "p.Gln435*",
          "transcript": "ENST00000352210.9",
          "protein_id": "ENSP00000343943.5",
          "transcript_support_level": 1,
          "aa_start": 435,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1303,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": 1513,
          "cdna_end": null,
          "cdna_length": 1686,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1303C>T",
          "hgvs_p": "p.Gln435*",
          "transcript": "NM_000309.5",
          "protein_id": "NP_000300.1",
          "transcript_support_level": null,
          "aa_start": 435,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1303,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": 1497,
          "cdna_end": null,
          "cdna_length": 1672,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1303C>T",
          "hgvs_p": "p.Gln435*",
          "transcript": "NM_001365398.1",
          "protein_id": "NP_001352327.1",
          "transcript_support_level": null,
          "aa_start": 435,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1303,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": 1413,
          "cdna_end": null,
          "cdna_length": 1588,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1204C>T",
          "hgvs_p": "p.Gln402*",
          "transcript": "NM_001350128.2",
          "protein_id": "NP_001337057.1",
          "transcript_support_level": null,
          "aa_start": 402,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 1204,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": 1459,
          "cdna_end": null,
          "cdna_length": 1634,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1192C>T",
          "hgvs_p": "p.Gln398*",
          "transcript": "NM_001365399.1",
          "protein_id": "NP_001352328.1",
          "transcript_support_level": null,
          "aa_start": 398,
          "aa_end": null,
          "aa_length": 440,
          "cds_start": 1192,
          "cds_end": null,
          "cds_length": 1323,
          "cdna_start": 1447,
          "cdna_end": null,
          "cdna_length": 1622,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1192C>T",
          "hgvs_p": "p.Gln398*",
          "transcript": "ENST00000652182.1",
          "protein_id": "ENSP00000498884.1",
          "transcript_support_level": null,
          "aa_start": 398,
          "aa_end": null,
          "aa_length": 434,
          "cds_start": 1192,
          "cds_end": null,
          "cds_length": 1307,
          "cdna_start": 1411,
          "cdna_end": null,
          "cdna_length": 1526,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1006C>T",
          "hgvs_p": "p.Gln336*",
          "transcript": "ENST00000652103.1",
          "protein_id": "ENSP00000498501.1",
          "transcript_support_level": null,
          "aa_start": 336,
          "aa_end": null,
          "aa_length": 378,
          "cds_start": 1006,
          "cds_end": null,
          "cds_length": 1137,
          "cdna_start": 1007,
          "cdna_end": null,
          "cdna_length": 1176,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.895C>T",
          "hgvs_p": "p.Gln299*",
          "transcript": "NM_001350129.2",
          "protein_id": "NP_001337058.1",
          "transcript_support_level": null,
          "aa_start": 299,
          "aa_end": null,
          "aa_length": 341,
          "cds_start": 895,
          "cds_end": null,
          "cds_length": 1026,
          "cdna_start": 1577,
          "cdna_end": null,
          "cdna_length": 1752,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.895C>T",
          "hgvs_p": "p.Gln299*",
          "transcript": "NM_001365400.1",
          "protein_id": "NP_001352329.1",
          "transcript_support_level": null,
          "aa_start": 299,
          "aa_end": null,
          "aa_length": 341,
          "cds_start": 895,
          "cds_end": null,
          "cds_length": 1026,
          "cdna_start": 1400,
          "cdna_end": null,
          "cdna_length": 1575,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.817C>T",
          "hgvs_p": "p.Gln273*",
          "transcript": "NM_001350130.2",
          "protein_id": "NP_001337059.1",
          "transcript_support_level": null,
          "aa_start": 273,
          "aa_end": null,
          "aa_length": 315,
          "cds_start": 817,
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          "cdna_start": 1590,
          "cdna_end": null,
          "cdna_length": 1765,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.817C>T",
          "hgvs_p": "p.Gln273*",
          "transcript": "NM_001350131.2",
          "protein_id": "NP_001337060.1",
          "transcript_support_level": null,
          "aa_start": 273,
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          "cds_start": 817,
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          "cds_length": 948,
          "cdna_start": 1415,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.817C>T",
          "hgvs_p": "p.Gln273*",
          "transcript": "NM_001365401.1",
          "protein_id": "NP_001352330.1",
          "transcript_support_level": null,
          "aa_start": 273,
          "aa_end": null,
          "aa_length": 315,
          "cds_start": 817,
          "cds_end": null,
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          "cdna_start": 1381,
          "cdna_end": null,
          "cdna_length": 1556,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 6,
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.559C>T",
          "hgvs_p": "p.Gln187*",
          "transcript": "ENST00000537523.5",
          "protein_id": "ENSP00000439544.1",
          "transcript_support_level": 3,
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          "cds_length": 690,
          "cdna_start": 561,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.427C>T",
          "hgvs_p": "p.Gln143*",
          "transcript": "ENST00000544598.5",
          "protein_id": "ENSP00000444216.1",
          "transcript_support_level": 2,
          "aa_start": 143,
          "aa_end": null,
          "aa_length": 185,
          "cds_start": 427,
          "cds_end": null,
          "cds_length": 558,
          "cdna_start": 638,
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          "cdna_length": 813,
          "mane_select": null,
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        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.292C>T",
          "hgvs_p": "p.Gln98*",
          "transcript": "ENST00000462866.5",
          "protein_id": "ENSP00000491797.1",
          "transcript_support_level": 5,
          "aa_start": 98,
          "aa_end": null,
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          "cds_start": 292,
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          "cds_length": 423,
          "cdna_start": 300,
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          "cdna_length": 473,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 13,
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1417C>T",
          "hgvs_p": "p.Gln473*",
          "transcript": "XM_011509671.2",
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        },
        {
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1318C>T",
          "hgvs_p": "p.Gln440*",
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          "protein_id": "XP_006711467.3",
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        },
        {
          "aa_ref": "Q",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1204C>T",
          "hgvs_p": "p.Gln402*",
          "transcript": "XM_011509672.4",
          "protein_id": "XP_011507974.2",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 444,
          "cds_start": 1204,
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          "cds_length": 1335,
          "cdna_start": 1234,
          "cdna_end": null,
          "cdna_length": 1409,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PPOX",
          "gene_hgnc_id": 9280,
          "hgvs_c": "c.1054C>T",
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      "spliceai_max_prediction": "Benign",
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      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1_Strong,PP5_Very_Strong",
      "acmg_by_gene": [
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      "clinvar_disease": "not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:1 LP:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
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  ],
  "message": null
}