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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-17033121-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=17033121&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 17033121,
"ref": "A",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "ENST00000375499.8",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala",
"transcript": "NM_003000.3",
"protein_id": "NP_002991.2",
"transcript_support_level": null,
"aa_start": 75,
"aa_end": null,
"aa_length": 280,
"cds_start": 225,
"cds_end": null,
"cds_length": 843,
"cdna_start": 238,
"cdna_end": null,
"cdna_length": 1015,
"mane_select": "ENST00000375499.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala",
"transcript": "ENST00000375499.8",
"protein_id": "ENSP00000364649.3",
"transcript_support_level": 1,
"aa_start": 75,
"aa_end": null,
"aa_length": 280,
"cds_start": 225,
"cds_end": null,
"cds_length": 843,
"cdna_start": 238,
"cdna_end": null,
"cdna_length": 1015,
"mane_select": "NM_003000.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.270T>C",
"hgvs_p": "p.Ala90Ala",
"transcript": "ENST00000714034.1",
"protein_id": "ENSP00000519325.1",
"transcript_support_level": null,
"aa_start": 90,
"aa_end": null,
"aa_length": 295,
"cds_start": 270,
"cds_end": null,
"cds_length": 888,
"cdna_start": 402,
"cdna_end": null,
"cdna_length": 1179,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.183T>C",
"hgvs_p": "p.Ala61Ala",
"transcript": "ENST00000491274.6",
"protein_id": "ENSP00000480482.2",
"transcript_support_level": 5,
"aa_start": 61,
"aa_end": null,
"aa_length": 266,
"cds_start": 183,
"cds_end": null,
"cds_length": 801,
"cdna_start": 295,
"cdna_end": null,
"cdna_length": 1130,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala",
"transcript": "NM_001407361.1",
"protein_id": "NP_001394290.1",
"transcript_support_level": null,
"aa_start": 75,
"aa_end": null,
"aa_length": 262,
"cds_start": 225,
"cds_end": null,
"cds_length": 789,
"cdna_start": 238,
"cdna_end": null,
"cdna_length": 931,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala",
"transcript": "ENST00000485515.6",
"protein_id": "ENSP00000519322.1",
"transcript_support_level": 5,
"aa_start": 75,
"aa_end": null,
"aa_length": 262,
"cds_start": 225,
"cds_end": null,
"cds_length": 789,
"cdna_start": 225,
"cdna_end": null,
"cdna_length": 948,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.54T>C",
"hgvs_p": "p.Ala18Ala",
"transcript": "ENST00000463045.3",
"protein_id": "ENSP00000481376.2",
"transcript_support_level": 3,
"aa_start": 18,
"aa_end": null,
"aa_length": 223,
"cds_start": 54,
"cds_end": null,
"cds_length": 672,
"cdna_start": 387,
"cdna_end": null,
"cdna_length": 1164,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.54T>C",
"hgvs_p": "p.Ala18Ala",
"transcript": "ENST00000714031.1",
"protein_id": "ENSP00000519321.1",
"transcript_support_level": null,
"aa_start": 18,
"aa_end": null,
"aa_length": 223,
"cds_start": 54,
"cds_end": null,
"cds_length": 672,
"cdna_start": 334,
"cdna_end": null,
"cdna_length": 1112,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala",
"transcript": "ENST00000714032.1",
"protein_id": "ENSP00000519323.1",
"transcript_support_level": null,
"aa_start": 75,
"aa_end": null,
"aa_length": 223,
"cds_start": 225,
"cds_end": null,
"cds_length": 672,
"cdna_start": 235,
"cdna_end": null,
"cdna_length": 841,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "c.54T>C",
"hgvs_p": "p.Ala18Ala",
"transcript": "ENST00000714037.1",
"protein_id": "ENSP00000519328.1",
"transcript_support_level": null,
"aa_start": 18,
"aa_end": null,
"aa_length": 148,
"cds_start": 54,
"cds_end": null,
"cds_length": 447,
"cdna_start": 355,
"cdna_end": null,
"cdna_length": 877,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.237T>C",
"hgvs_p": null,
"transcript": "ENST00000466613.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 828,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.142T>C",
"hgvs_p": null,
"transcript": "ENST00000475506.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 550,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.54T>C",
"hgvs_p": null,
"transcript": "ENST00000714029.1",
"protein_id": "ENSP00000519319.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1164,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.225T>C",
"hgvs_p": null,
"transcript": "ENST00000714030.1",
"protein_id": "ENSP00000519320.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 971,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.*176T>C",
"hgvs_p": null,
"transcript": "ENST00000714033.1",
"protein_id": "ENSP00000519324.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1101,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.*40T>C",
"hgvs_p": null,
"transcript": "ENST00000714035.1",
"protein_id": "ENSP00000519326.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1168,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.54T>C",
"hgvs_p": null,
"transcript": "ENST00000714036.1",
"protein_id": "ENSP00000519327.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1129,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.*176T>C",
"hgvs_p": null,
"transcript": "ENST00000714033.1",
"protein_id": "ENSP00000519324.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1101,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.*40T>C",
"hgvs_p": null,
"transcript": "ENST00000714035.1",
"protein_id": "ENSP00000519326.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1168,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"hgvs_c": "n.201-4385T>C",
"hgvs_p": null,
"transcript": "ENST00000714038.1",
"protein_id": "ENSP00000519329.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 842,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "SDHB",
"gene_hgnc_id": 10681,
"dbsnp": "rs201762207",
"frequency_reference_population": 0.00004586104,
"hom_count_reference_population": 0,
"allele_count_reference_population": 74,
"gnomad_exomes_af": 0.0000437954,
"gnomad_genomes_af": 0.0000656901,
"gnomad_exomes_ac": 64,
"gnomad_genomes_ac": 10,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.5,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.09,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7"
],
"verdict": "Benign",
"transcript": "ENST00000375499.8",
"gene_symbol": "SDHB",
"hgnc_id": 10681,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.225T>C",
"hgvs_p": "p.Ala75Ala"
}
],
"clinvar_disease": "Gastrointestinal stromal tumor,Hereditary cancer-predisposing syndrome,Hereditary pheochromocytoma-paraganglioma,Pheochromocytoma,Pheochromocytoma/paraganglioma syndrome 4,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:4 B:1",
"phenotype_combined": "Pheochromocytoma/paraganglioma syndrome 4;Pheochromocytoma;Gastrointestinal stromal tumor|Hereditary cancer-predisposing syndrome|not specified|Hereditary pheochromocytoma-paraganglioma|Pheochromocytoma/paraganglioma syndrome 4",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}