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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-209432291-TAGCAGCAGCAGCAGCAGCAGCAGCAGC-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=209432291&ref=TAGCAGCAGCAGCAGCAGCAGCAGCAGC&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 209432291,
      "ref": "TAGCAGCAGCAGCAGCAGCAGCAGCAGC",
      "alt": "T",
      "effect": "non_coding_transcript_exon_variant",
      "transcript": "ENST00000433108.1",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.653_679delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000366437.8",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 897,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.764_790delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000429156.7",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1010,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.685_711delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000431096.7",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 943,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.3108_3134delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000433108.1",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3348,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.295_321delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000440276.2",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 539,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.829_855delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000451937.7",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1174,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.376_402delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000603283.5",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 455,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.900_926delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000660261.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1144,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.678_704delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000667171.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 922,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.852_878delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000670788.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1096,
          "mane_select": null,
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        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.694_720delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
          "hgvs_p": null,
          "transcript": "ENST00000691439.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1237,
          "mane_select": null,
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          "biotype": null,
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        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.605_631delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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          "cdna_start": null,
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        {
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
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          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.556_582delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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        {
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
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          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.714_740delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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          "transcript": "ENST00000830930.1",
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        {
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          ],
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        {
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          ],
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          "gene_symbol": "MIR205HG",
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          "hgvs_c": "n.560_586delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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        {
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          "consequences": [
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          ],
          "exon_rank": 3,
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.528_554delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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          "transcript": "ENST00000830935.1",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 5,
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          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
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          "hgvs_c": "n.642_668delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
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        },
        {
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          "strand": true,
          "consequences": [
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "MIR205HG",
          "gene_hgnc_id": 43562,
          "hgvs_c": "n.770_796delGCAGCAGCAGCAGCAGCAGCAGCAGCA",
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          "transcript": "ENST00000830944.1",
          "protein_id": null,
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          "cdna_start": null,
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          "cdna_length": 1017,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
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}