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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-232441535-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=232441535&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 232441535,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_020808.5",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "NM_020808.5",
"protein_id": "NP_065859.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000674635.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020808.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000674635.1",
"protein_id": "ENSP00000502693.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020808.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674635.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000676213.1",
"protein_id": "ENSP00000501897.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1773,
"cds_start": null,
"cds_end": null,
"cds_length": 5322,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000676213.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000964479.1",
"protein_id": "ENSP00000634538.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1773,
"cds_start": null,
"cds_end": null,
"cds_length": 5322,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964479.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000366630.5",
"protein_id": "ENSP00000355589.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000366630.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883509.1",
"protein_id": "ENSP00000553568.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883509.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000930083.1",
"protein_id": "ENSP00000600142.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930083.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000964476.1",
"protein_id": "ENSP00000634535.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964476.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000964481.1",
"protein_id": "ENSP00000634540.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964481.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000964483.1",
"protein_id": "ENSP00000634542.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
"cds_end": null,
"cds_length": 5169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964483.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000964495.1",
"protein_id": "ENSP00000634554.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1722,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964495.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "NM_001377488.1",
"protein_id": "NP_001364417.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1704,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001377488.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000674749.1",
"protein_id": "ENSP00000502328.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674749.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
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"transcript": "ENST00000675407.1",
"protein_id": "ENSP00000502580.1",
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000675407.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000675685.1",
"protein_id": "ENSP00000501553.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000675685.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883504.1",
"protein_id": "ENSP00000553563.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000883504.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883505.1",
"protein_id": "ENSP00000553564.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1704,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883505.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883506.1",
"protein_id": "ENSP00000553565.1",
"transcript_support_level": null,
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"cdna_start": null,
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883507.1",
"protein_id": "ENSP00000553566.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000883507.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883508.1",
"protein_id": "ENSP00000553567.1",
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"biotype": "protein_coding",
"feature": "ENST00000883508.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000883510.1",
"protein_id": "ENSP00000553569.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1704,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883510.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SIPA1L2",
"gene_hgnc_id": 23800,
"hgvs_c": "c.3539-141A>G",
"hgvs_p": null,
"transcript": "ENST00000930079.1",
"protein_id": "ENSP00000600138.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1704,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930079.1"
},
{
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}