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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-66694653-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=66694653&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 66694653,
      "ref": "A",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "NM_001350217.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1571-781A>G",
          "hgvs_p": null,
          "transcript": "NM_032291.4",
          "protein_id": "NP_115667.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 828,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2487,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000371037.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_032291.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1571-781A>G",
          "hgvs_p": null,
          "transcript": "ENST00000371037.9",
          "protein_id": "ENSP00000360076.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 828,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2487,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_032291.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000371037.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 15,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1039+149A>G",
          "hgvs_p": null,
          "transcript": "ENST00000371039.5",
          "protein_id": "ENSP00000360078.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 631,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1896,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000371039.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": 19,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1664-781A>G",
          "hgvs_p": null,
          "transcript": "ENST00000237247.10",
          "protein_id": "ENSP00000237247.6",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 859,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2580,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000237247.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1652-781A>G",
          "hgvs_p": null,
          "transcript": "ENST00000684651.1",
          "protein_id": "ENSP00000507629.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 855,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2568,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000684651.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1583-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001350217.2",
          "protein_id": "NP_001337146.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 832,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2499,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001350217.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1583-781A>G",
          "hgvs_p": null,
          "transcript": "ENST00000941752.1",
          "protein_id": "ENSP00000611811.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 832,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2499,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000941752.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1571-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001376534.1",
          "protein_id": "NP_001363463.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 828,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2487,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376534.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1571-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001376535.1",
          "protein_id": "NP_001363464.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 828,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2487,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376535.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1564+149A>G",
          "hgvs_p": null,
          "transcript": "NM_001376537.1",
          "protein_id": "NP_001363466.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 826,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2481,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376537.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 15,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1547-781A>G",
          "hgvs_p": null,
          "transcript": "ENST00000683499.1",
          "protein_id": "ENSP00000506830.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 820,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2463,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683499.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1582+4337A>G",
          "hgvs_p": null,
          "transcript": "NM_001376538.1",
          "protein_id": "NP_001363467.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 812,
          "cds_start": null,
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          "cds_length": 2439,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376538.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 25,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1570+4337A>G",
          "hgvs_p": null,
          "transcript": "NM_001376539.1",
          "protein_id": "NP_001363468.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 808,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376539.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1570+4337A>G",
          "hgvs_p": null,
          "transcript": "NM_001376540.1",
          "protein_id": "NP_001363469.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 808,
          "cds_start": null,
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          "cds_length": 2427,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376540.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "consequences": [
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          "exon_count": 24,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1570+4337A>G",
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          "transcript": "ENST00000941750.1",
          "protein_id": "ENSP00000611809.1",
          "transcript_support_level": null,
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          "aa_length": 808,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000941750.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1499-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001376541.1",
          "protein_id": "NP_001363470.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 804,
          "cds_start": null,
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          "cds_length": 2415,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001376541.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1499-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001376542.1",
          "protein_id": "NP_001363471.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 804,
          "cds_start": null,
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          "cds_length": 2415,
          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "intron_rank": 16,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1499-781A>G",
          "hgvs_p": null,
          "transcript": "NM_001376543.1",
          "protein_id": "NP_001363472.1",
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001376543.1"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 24,
          "intron_rank": 16,
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          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1499-781A>G",
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          "transcript": "ENST00000941753.1",
          "protein_id": "ENSP00000611812.1",
          "transcript_support_level": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000941753.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 16,
          "intron_rank_end": null,
          "gene_symbol": "SGIP1",
          "gene_hgnc_id": 25412,
          "hgvs_c": "c.1546+4337A>G",
          "hgvs_p": null,
          "transcript": "ENST00000941748.1",
          "protein_id": "ENSP00000611807.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 800,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2403,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000941748.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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      "custom_annotations": null
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}