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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-84655414-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=84655414&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 84655414,
"ref": "A",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000342203.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "NM_001166293.2",
"protein_id": "NP_001159765.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 614,
"cds_start": -4,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5752,
"mane_select": "ENST00000342203.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "ENST00000342203.8",
"protein_id": "ENSP00000340279.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 614,
"cds_start": -4,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5752,
"mane_select": "NM_001166293.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.-54-3417T>G",
"hgvs_p": null,
"transcript": "ENST00000603677.1",
"protein_id": "ENSP00000473763.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 87,
"cds_start": -4,
"cds_end": null,
"cds_length": 264,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1149,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "n.1501+51T>G",
"hgvs_p": null,
"transcript": "ENST00000476905.6",
"protein_id": "ENSP00000474925.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2272,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "n.357T>G",
"hgvs_p": null,
"transcript": "ENST00000459708.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 453,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "NM_001166417.2",
"protein_id": "NP_001159889.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 614,
"cds_start": -4,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6019,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "NM_014021.4",
"protein_id": "NP_054740.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 614,
"cds_start": -4,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5802,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1308+418T>G",
"hgvs_p": null,
"transcript": "NM_001166294.2",
"protein_id": "NP_001159766.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 587,
"cds_start": -4,
"cds_end": null,
"cds_length": 1764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5620,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1308+418T>G",
"hgvs_p": null,
"transcript": "NM_001166295.2",
"protein_id": "NP_001159767.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 587,
"cds_start": -4,
"cds_end": null,
"cds_length": 1764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5837,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1308+418T>G",
"hgvs_p": null,
"transcript": "ENST00000437941.6",
"protein_id": "ENSP00000412781.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 587,
"cds_start": -4,
"cds_end": null,
"cds_length": 1764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5843,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1308+418T>G",
"hgvs_p": null,
"transcript": "ENST00000605755.5",
"protein_id": "ENSP00000474480.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 587,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 1933,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "n.1389+418T>G",
"hgvs_p": null,
"transcript": "ENST00000481102.5",
"protein_id": "ENSP00000432261.1",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "XM_005270427.3",
"protein_id": "XP_005270484.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
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"transcript": "XM_005270428.3",
"protein_id": "XP_005270485.1",
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},
{
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"intron_variant"
],
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"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "XM_017000234.3",
"protein_id": "XP_016855723.1",
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},
{
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"canonical": false,
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 13,
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"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
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"transcript": "XM_047444197.1",
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},
{
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],
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"intron_rank": 12,
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"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
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"transcript": "XM_047444202.1",
"protein_id": "XP_047300158.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1389+418T>G",
"hgvs_p": null,
"transcript": "XM_047444208.1",
"protein_id": "XP_047300164.1",
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"cdna_start": null,
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},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
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"hgvs_c": "c.1389+418T>G",
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"transcript": "XM_047444216.1",
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},
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],
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"gene_symbol": "SSX2IP",
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"hgvs_c": "c.1386+418T>G",
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},
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"strand": false,
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],
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"gene_symbol": "SSX2IP",
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"hgvs_c": "c.1386+418T>G",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1386+418T>G",
"hgvs_p": null,
"transcript": "XM_017000236.3",
"protein_id": "XP_016855725.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SSX2IP",
"gene_hgnc_id": 16509,
"hgvs_c": "c.1386+418T>G",
"hgvs_p": null,
"transcript": "XM_024453015.2",
"protein_id": "XP_024308783.1",
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"aa_start": null,
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"cdna_start": null,
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