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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-10942760-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=10942760&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 10942760,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_001326325.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.687+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000428520.7",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1577,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.455+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000635670.2",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1022,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.146+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326325.2",
"protein_id": "NP_001313254.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 539,
"cds_start": -4,
"cds_end": null,
"cds_length": 1620,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7933,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.89+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326327.2",
"protein_id": "NP_001313256.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 526,
"cds_start": -4,
"cds_end": null,
"cds_length": 1581,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7885,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.89+22761A>G",
"hgvs_p": null,
"transcript": "ENST00000637215.1",
"protein_id": "ENSP00000490185.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 526,
"cds_start": -4,
"cds_end": null,
"cds_length": 1581,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.89+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326326.2",
"protein_id": "NP_001313255.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 520,
"cds_start": -4,
"cds_end": null,
"cds_length": 1563,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7867,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.89+22761A>G",
"hgvs_p": null,
"transcript": "ENST00000636488.1",
"protein_id": "ENSP00000489955.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 520,
"cds_start": -4,
"cds_end": null,
"cds_length": 1563,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3908,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+2306A>G",
"hgvs_p": null,
"transcript": "NM_001326319.2",
"protein_id": "NP_001313248.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 508,
"cds_start": -4,
"cds_end": null,
"cds_length": 1527,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9318,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326323.2",
"protein_id": "NP_001313252.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 504,
"cds_start": -4,
"cds_end": null,
"cds_length": 1515,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8004,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326321.2",
"protein_id": "NP_001313250.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 498,
"cds_start": -4,
"cds_end": null,
"cds_length": 1497,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9250,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326318.2",
"protein_id": "NP_001313247.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 490,
"cds_start": -4,
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"cds_length": 1473,
"cdna_start": null,
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"cdna_length": 9226,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326320.2",
"protein_id": "NP_001313249.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326324.2",
"protein_id": "NP_001313253.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 490,
"cds_start": -4,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326328.2",
"protein_id": "NP_001313257.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
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"exon_count": 15,
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"gene_symbol": "CELF2",
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"hgvs_c": "c.-20+22761A>G",
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"transcript": "ENST00000638035.1",
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"aa_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CELF2",
"gene_hgnc_id": 2550,
"hgvs_c": "c.-20+22761A>G",
"hgvs_p": null,
"transcript": "NM_001326317.2",
"protein_id": "NP_001313246.1",
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},
{
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],
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"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.233+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000441855.2",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.1189+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000596092.6",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.248+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000600516.5",
"protein_id": null,
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},
{
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"strand": false,
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],
"exon_rank": null,
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},
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"strand": false,
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],
"exon_rank": null,
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"gene_symbol": "LINC00710",
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"hgvs_c": "n.656+1423T>C",
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},
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.1223+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000619619.5",
"protein_id": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "LINC00710",
"gene_hgnc_id": 27386,
"hgvs_c": "n.493+1423T>C",
"hgvs_p": null,
"transcript": "ENST00000628644.3",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
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}