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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-31388277-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=31388277&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 31388277,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000424869.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "c.58+68985C>T",
"hgvs_p": null,
"transcript": "NM_001174096.2",
"protein_id": "NP_001167567.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5937,
"mane_select": "ENST00000424869.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "c.58+68985C>T",
"hgvs_p": null,
"transcript": "ENST00000424869.6",
"protein_id": "ENSP00000415961.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5937,
"mane_select": "NM_001174096.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "c.58+68985C>T",
"hgvs_p": null,
"transcript": "ENST00000320985.14",
"protein_id": "ENSP00000319248.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5423,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "c.58+68985C>T",
"hgvs_p": null,
"transcript": "ENST00000558440.5",
"protein_id": "ENSP00000453970.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 287,
"cds_start": -4,
"cds_end": null,
"cds_length": 864,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.*195+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000437844.6",
"protein_id": "ENSP00000405958.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6246,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.768+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000488625.6",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6026,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.202+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000557827.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 877,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.697+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000559496.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1381,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.127+33085C>T",
"hgvs_p": null,
"transcript": "ENST00000559858.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2745,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.650+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000560196.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZEB1",
"gene_hgnc_id": 11642,
"hgvs_c": "n.236+1011C>T",
"hgvs_p": null,
"transcript": "ENST00000561061.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
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"gene_symbol": "ZEB1",
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"hgvs_c": "n.675+479C>T",
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"transcript": "ENST00000561304.5",
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},
{
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],
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.58+68985C>T",
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"transcript": "NM_030751.6",
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},
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],
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.16+66426C>T",
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"transcript": "NM_001323676.2",
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},
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],
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"gene_symbol": "ZEB1",
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},
{
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],
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.7+66745C>T",
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"transcript": "NM_001128128.3",
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},
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},
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],
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.7+66745C>T",
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"transcript": "NM_001174094.2",
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},
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.58+68985C>T",
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],
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],
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},
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],
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.58+68985C>T",
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"transcript": "ENST00000542815.7",
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},
{
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],
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"exon_count": 7,
"intron_rank": 1,
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"gene_symbol": "ZEB1",
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"hgvs_c": "c.58+68985C>T",
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"transcript": "NM_001323674.2",
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},
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}