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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-86716348-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=86716348&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 1,
"criteria": [
"PM2",
"BP4"
],
"effects": [
"missense_variant"
],
"gene_symbol": "LDB3",
"hgnc_id": 15710,
"hgvs_c": "c.1268C>A",
"hgvs_p": "p.Pro423Gln",
"inheritance_mode": "AD,AR",
"pathogenic_score": 2,
"score": 1,
"transcript": "NM_001171610.2",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_score": 1,
"allele_count_reference_population": 1,
"alphamissense_prediction": null,
"alphamissense_score": 0.1272,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.31,
"chr": "10",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.38720428943634033,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 727,
"aa_ref": "P",
"aa_start": 418,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5363,
"cdna_start": 1336,
"cds_end": null,
"cds_length": 2184,
"cds_start": 1253,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "NM_007078.3",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1253C>A",
"hgvs_p": "p.Pro418Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000361373.9",
"protein_coding": true,
"protein_id": "NP_009009.1",
"strand": true,
"transcript": "NM_007078.3",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 727,
"aa_ref": "P",
"aa_start": 418,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5363,
"cdna_start": 1336,
"cds_end": null,
"cds_length": 2184,
"cds_start": 1253,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000361373.9",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1253C>A",
"hgvs_p": "p.Pro418Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_007078.3",
"protein_coding": true,
"protein_id": "ENSP00000355296.3",
"strand": true,
"transcript": "ENST00000361373.9",
"transcript_support_level": 1
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 795,
"aa_ref": "P",
"aa_start": 486,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2436,
"cdna_start": 1477,
"cds_end": null,
"cds_length": 2388,
"cds_start": 1457,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000945680.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1457C>A",
"hgvs_p": "p.Pro486Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000615739.1",
"strand": true,
"transcript": "ENST00000945680.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 774,
"aa_ref": "P",
"aa_start": 465,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4681,
"cdna_start": 1447,
"cds_end": null,
"cds_length": 2325,
"cds_start": 1394,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000871464.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1394C>A",
"hgvs_p": "p.Pro465Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541523.1",
"strand": true,
"transcript": "ENST00000871464.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 743,
"aa_ref": "P",
"aa_start": 434,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4616,
"cdna_start": 1384,
"cds_end": null,
"cds_length": 2232,
"cds_start": 1301,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000871462.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1301C>A",
"hgvs_p": "p.Pro434Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541521.1",
"strand": true,
"transcript": "ENST00000871462.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 732,
"aa_ref": "P",
"aa_start": 423,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5378,
"cdna_start": 1351,
"cds_end": null,
"cds_length": 2199,
"cds_start": 1268,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "NM_001171610.2",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1268C>A",
"hgvs_p": "p.Pro423Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001165081.1",
"strand": true,
"transcript": "NM_001171610.2",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 732,
"aa_ref": "P",
"aa_start": 423,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2309,
"cdna_start": 1353,
"cds_end": null,
"cds_length": 2199,
"cds_start": 1268,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000623056.4",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1268C>A",
"hgvs_p": "p.Pro423Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000485500.1",
"strand": true,
"transcript": "ENST00000623056.4",
"transcript_support_level": 5
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 732,
"aa_ref": "P",
"aa_start": 423,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4661,
"cdna_start": 1427,
"cds_end": null,
"cds_length": 2199,
"cds_start": 1268,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871441.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1268C>A",
"hgvs_p": "p.Pro423Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541500.1",
"strand": true,
"transcript": "ENST00000871441.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 732,
"aa_ref": "P",
"aa_start": 423,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4585,
"cdna_start": 1351,
"cds_end": null,
"cds_length": 2199,
"cds_start": 1268,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871460.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1268C>A",
"hgvs_p": "p.Pro423Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541519.1",
"strand": true,
"transcript": "ENST00000871460.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 727,
"aa_ref": "P",
"aa_start": 418,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5414,
"cdna_start": 1387,
"cds_end": null,
"cds_length": 2184,
"cds_start": 1253,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871439.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1253C>A",
"hgvs_p": "p.Pro418Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541498.1",
"strand": true,
"transcript": "ENST00000871439.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 727,
"aa_ref": "P",
"aa_start": 418,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4610,
"cdna_start": 1376,
"cds_end": null,
"cds_length": 2184,
"cds_start": 1253,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000871467.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1253C>A",
"hgvs_p": "p.Pro418Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541526.1",
"strand": true,
"transcript": "ENST00000871467.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 711,
"aa_ref": "P",
"aa_start": 402,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4618,
"cdna_start": 1385,
"cds_end": null,
"cds_length": 2136,
"cds_start": 1205,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871456.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1205C>A",
"hgvs_p": "p.Pro402Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541515.1",
"strand": true,
"transcript": "ENST00000871456.1",
"transcript_support_level": null
},
{
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"aa_length": 710,
"aa_ref": "P",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4523,
"cdna_start": 1340,
"cds_end": null,
"cds_length": 2133,
"cds_start": 1253,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871458.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1253C>A",
"hgvs_p": "p.Pro418Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541517.1",
"strand": true,
"transcript": "ENST00000871458.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 696,
"aa_ref": "P",
"aa_start": 387,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4574,
"cdna_start": 1340,
"cds_end": null,
"cds_length": 2091,
"cds_start": 1160,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000871454.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1160C>A",
"hgvs_p": "p.Pro387Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541513.1",
"strand": true,
"transcript": "ENST00000871454.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_length": 680,
"aa_ref": "P",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5222,
"cdna_start": 1195,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "NM_001368066.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001354995.1",
"strand": true,
"transcript": "NM_001368066.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_length": 680,
"aa_ref": "P",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2296,
"cdna_start": 1177,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000689740.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000510300.1",
"strand": true,
"transcript": "ENST00000689740.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_length": 680,
"aa_ref": "P",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3652,
"cdna_start": 1236,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
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],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000693680.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509539.1",
"strand": true,
"transcript": "ENST00000693680.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_length": 680,
"aa_ref": "P",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5224,
"cdna_start": 1201,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000871440.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541499.1",
"strand": true,
"transcript": "ENST00000871440.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_ref": "P",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4426,
"cdna_start": 1192,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871442.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541501.1",
"strand": true,
"transcript": "ENST00000871442.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 680,
"aa_ref": "P",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5321,
"cdna_start": 1296,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000871446.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
"hgvs_c": "c.1112C>A",
"hgvs_p": "p.Pro371Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000541505.1",
"strand": true,
"transcript": "ENST00000871446.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 680,
"aa_ref": "P",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4530,
"cdna_start": 1296,
"cds_end": null,
"cds_length": 2043,
"cds_start": 1112,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000871450.1",
"gene_hgnc_id": 15710,
"gene_symbol": "LDB3",
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