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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-88947378-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=88947378&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 88947378,
      "ref": "C",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000224784.10",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001613.4",
          "protein_id": "NP_001604.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 204,
          "cdna_end": null,
          "cdna_length": 1349,
          "mane_select": "ENST00000224784.10",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000224784.10",
          "protein_id": "ENSP00000224784.6",
          "transcript_support_level": 1,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 204,
          "cdna_end": null,
          "cdna_length": 1349,
          "mane_select": "NM_001613.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000713598.1",
          "protein_id": "ENSP00000518894.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 391,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1176,
          "cdna_start": 204,
          "cdna_end": null,
          "cdna_length": 1391,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001141945.3",
          "protein_id": "NP_001135417.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 560,
          "cdna_end": null,
          "cdna_length": 1705,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001320855.2",
          "protein_id": "NP_001307784.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 477,
          "cdna_end": null,
          "cdna_length": 1622,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001406462.1",
          "protein_id": "NP_001393391.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 635,
          "cdna_end": null,
          "cdna_length": 1780,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001406463.1",
          "protein_id": "NP_001393392.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 718,
          "cdna_end": null,
          "cdna_length": 1863,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001406464.1",
          "protein_id": "NP_001393393.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 349,
          "cdna_end": null,
          "cdna_length": 1494,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000415557.2",
          "protein_id": "ENSP00000396730.2",
          "transcript_support_level": 3,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 562,
          "cdna_end": null,
          "cdna_length": 1694,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000458159.6",
          "protein_id": "ENSP00000398239.2",
          "transcript_support_level": 3,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 472,
          "cdna_end": null,
          "cdna_length": 1617,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000713597.1",
          "protein_id": "ENSP00000518893.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 138,
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          "cds_length": 1134,
          "cdna_start": 408,
          "cdna_end": null,
          "cdna_length": 1805,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000713599.1",
          "protein_id": "ENSP00000518895.1",
          "transcript_support_level": null,
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          "aa_length": 377,
          "cds_start": 138,
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          "cdna_start": 234,
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          "mane_select": null,
          "mane_plus": null,
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        },
        {
          "aa_ref": "M",
          "aa_alt": "I",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "ENST00000713602.1",
          "protein_id": "ENSP00000518898.1",
          "transcript_support_level": null,
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          "cds_start": 138,
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          "cdna_start": 620,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "M",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001406466.1",
          "protein_id": "NP_001393395.1",
          "transcript_support_level": null,
          "aa_start": 46,
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          "cds_length": 1023,
          "cdna_start": 204,
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          "cdna_length": 1238,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "M",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
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          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "ACTA2",
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          "hgvs_c": "c.138G>T",
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          "feature": null
        },
        {
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile",
          "transcript": "NM_001406471.1",
          "protein_id": "NP_001393400.1",
          "transcript_support_level": null,
          "aa_start": 46,
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          "cds_start": 138,
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          "cds_length": 942,
          "cdna_start": 560,
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          "cdna_length": 1513,
          "mane_select": null,
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          "biotype": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "n.204G>T",
          "hgvs_p": null,
          "transcript": "ENST00000480297.6",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
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          "cdna_length": 2828,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "n.1619G>T",
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          "transcript": "ENST00000482085.2",
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          "mane_select": null,
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        },
        {
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          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "n.204G>T",
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          "transcript": "ENST00000488967.5",
          "protein_id": null,
          "transcript_support_level": 2,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTA2",
          "gene_hgnc_id": 130,
          "hgvs_c": "n.138G>T",
          "hgvs_p": null,
          "transcript": "ENST00000713603.1",
          "protein_id": "ENSP00000518899.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1348,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "STAMBPL1",
          "gene_hgnc_id": 24105,
          "hgvs_c": "c.1254+24942C>A",
          "hgvs_p": null,
          "transcript": "ENST00000371927.7",
          "protein_id": "ENSP00000360995.3",
          "transcript_support_level": 2,
          "aa_start": null,
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          "gene_symbol": "ACTA2",
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          "transcript": "NM_001406469.1",
          "protein_id": "NP_001393398.1",
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        {
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          "gene_symbol": "ACTA2",
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          "hgvs_c": "c.129+1424G>T",
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          "transcript": "ENST00000713601.1",
          "protein_id": "ENSP00000518897.1",
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      ],
      "gene_symbol": "ACTA2",
      "gene_hgnc_id": 130,
      "dbsnp": "rs878854466",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.9209495186805725,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.836,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.9976,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.21,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.905,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 21,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PS1,PM1,PM2,PM5,PP2,PP3_Moderate,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 21,
          "benign_score": 0,
          "pathogenic_score": 21,
          "criteria": [
            "PS1",
            "PM1",
            "PM2",
            "PM5",
            "PP2",
            "PP3_Moderate",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000224784.10",
          "gene_symbol": "ACTA2",
          "hgnc_id": 130,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD,Unknown",
          "hgvs_c": "c.138G>T",
          "hgvs_p": "p.Met46Ile"
        },
        {
          "score": 12,
          "benign_score": 0,
          "pathogenic_score": 12,
          "criteria": [
            "PM2",
            "PP3_Moderate",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000371927.7",
          "gene_symbol": "STAMBPL1",
          "hgnc_id": 24105,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1254+24942C>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " familial thoracic 6,Aortic aneurysm,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:1 LP:1",
      "phenotype_combined": "Aortic aneurysm, familial thoracic 6|not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}