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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-93600623-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=93600623&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 93600623,
      "ref": "A",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "NM_006744.4",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "NM_006744.4",
          "protein_id": "NP_006735.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000371464.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006744.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000371464.8",
          "protein_id": "ENSP00000360519.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_006744.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000371464.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "FFAR4",
          "gene_hgnc_id": 19061,
          "hgvs_c": "c.697-3451A>G",
          "hgvs_p": null,
          "transcript": "ENST00000604414.1",
          "protein_id": "ENSP00000474477.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 236,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 711,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000604414.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.252+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854018.1",
          "protein_id": "ENSP00000524077.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 209,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 630,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854018.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "NM_001323517.1",
          "protein_id": "NP_001310446.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001323517.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000371467.5",
          "protein_id": "ENSP00000360522.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000371467.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854001.1",
          "protein_id": "ENSP00000524060.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854001.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854003.1",
          "protein_id": "ENSP00000524062.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854003.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854004.1",
          "protein_id": "ENSP00000524063.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854004.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854005.1",
          "protein_id": "ENSP00000524064.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854005.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854006.1",
          "protein_id": "ENSP00000524065.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854006.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854007.1",
          "protein_id": "ENSP00000524066.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854007.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
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          "intron_rank": 3,
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854008.1",
          "protein_id": "ENSP00000524067.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 201,
          "cds_start": null,
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          "cds_length": 606,
          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854015.1",
          "protein_id": "ENSP00000524074.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "gene_symbol": "RBP4",
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          "hgvs_c": "c.248+44T>C",
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          "transcript": "ENST00000854017.1",
          "protein_id": "ENSP00000524076.1",
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          "aa_length": 201,
          "cds_start": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.242+44T>C",
          "hgvs_p": null,
          "transcript": "NM_001323518.2",
          "protein_id": "NP_001310447.1",
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          "aa_start": null,
          "aa_end": null,
          "aa_length": 199,
          "cds_start": null,
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          "cds_length": 600,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001323518.2"
        },
        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          "exon_rank": null,
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          "intron_rank": 3,
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.242+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000371469.2",
          "protein_id": "ENSP00000360524.2",
          "transcript_support_level": 5,
          "aa_start": null,
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          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
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        {
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          "intron_rank": 3,
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.215+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854014.1",
          "protein_id": "ENSP00000524073.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 190,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 573,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000854014.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
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        {
          "aa_ref": null,
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          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 3,
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          "transcript": "ENST00000854009.1",
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          "exon_count": 6,
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          "gene_symbol": "RBP4",
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          "hgvs_c": "c.173+44T>C",
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          "transcript": "ENST00000854016.1",
          "protein_id": "ENSP00000524075.1",
          "transcript_support_level": null,
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          "cds_start": null,
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          "cds_length": 531,
          "cdna_start": null,
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        },
        {
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          "protein_coding": true,
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          "exon_count": 6,
          "intron_rank": 3,
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          "gene_symbol": "RBP4",
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          "transcript": "ENST00000960264.1",
          "protein_id": "ENSP00000630323.1",
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          "cds_length": 483,
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          "biotype": "protein_coding",
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        {
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          "protein_coding": true,
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          ],
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          "exon_count": 6,
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
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          "transcript": "ENST00000854012.1",
          "protein_id": "ENSP00000524071.1",
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          "cds_start": null,
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          "cds_length": 468,
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          "biotype": "protein_coding",
          "feature": "ENST00000854012.1"
        },
        {
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            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 5,
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          "gene_symbol": "RBP4",
          "gene_hgnc_id": 9922,
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null,
          "transcript": "ENST00000854010.1",
          "protein_id": "ENSP00000524069.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": null,
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          "cds_length": 393,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000854010.1"
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      ],
      "gene_symbol": "RBP4",
      "gene_hgnc_id": 9922,
      "dbsnp": "rs61461737",
      "frequency_reference_population": 0.073808596,
      "hom_count_reference_population": 4948,
      "allele_count_reference_population": 118952,
      "gnomad_exomes_af": 0.0730418,
      "gnomad_genomes_af": 0.0811583,
      "gnomad_exomes_ac": 106595,
      "gnomad_genomes_ac": 12357,
      "gnomad_exomes_homalt": 4332,
      "gnomad_genomes_homalt": 616,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.8600000143051147,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.86,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.419,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -20,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BA1",
      "acmg_by_gene": [
        {
          "score": -20,
          "benign_score": 20,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "NM_006744.4",
          "gene_symbol": "RBP4",
          "hgnc_id": 9922,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.248+44T>C",
          "hgvs_p": null
        },
        {
          "score": -20,
          "benign_score": 20,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000604414.1",
          "gene_symbol": "FFAR4",
          "hgnc_id": 19061,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.697-3451A>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "B:2",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}