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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-10000943-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=10000943&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 10000943,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000256190.13",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "NM_030962.4",
          "protein_id": "NP_112224.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1849,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5550,
          "cdna_start": 982,
          "cdna_end": null,
          "cdna_length": 7450,
          "mane_select": "ENST00000256190.13",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000256190.13",
          "protein_id": "ENSP00000256190.8",
          "transcript_support_level": 1,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1849,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5550,
          "cdna_start": 982,
          "cdna_end": null,
          "cdna_length": 7450,
          "mane_select": "NM_030962.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000533770.6",
          "protein_id": "ENSP00000509247.1",
          "transcript_support_level": 1,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1152,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 3459,
          "cdna_start": 832,
          "cdna_end": null,
          "cdna_length": 4914,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "n.982T>C",
          "hgvs_p": null,
          "transcript": "ENST00000526353.2",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7399,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "NM_001386339.1",
          "protein_id": "NP_001373268.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1881,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5646,
          "cdna_start": 982,
          "cdna_end": null,
          "cdna_length": 7546,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000689128.1",
          "protein_id": "ENSP00000509587.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1881,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5646,
          "cdna_start": 891,
          "cdna_end": null,
          "cdna_length": 7279,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000675281.2",
          "protein_id": "ENSP00000502491.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1874,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5625,
          "cdna_start": 982,
          "cdna_end": null,
          "cdna_length": 7347,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000676387.2",
          "protein_id": "ENSP00000502779.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1868,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5607,
          "cdna_start": 970,
          "cdna_end": null,
          "cdna_length": 7167,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.868T>C",
          "hgvs_p": "p.Ser290Pro",
          "transcript": "NM_001424318.1",
          "protein_id": "NP_001411247.1",
          "transcript_support_level": null,
          "aa_start": 290,
          "aa_end": null,
          "aa_length": 1861,
          "cds_start": 868,
          "cds_end": null,
          "cds_length": 5586,
          "cdna_start": 1412,
          "cdna_end": null,
          "cdna_length": 7880,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.868T>C",
          "hgvs_p": "p.Ser290Pro",
          "transcript": "NM_001425070.1",
          "protein_id": "NP_001411999.1",
          "transcript_support_level": null,
          "aa_start": 290,
          "aa_end": null,
          "aa_length": 1861,
          "cds_start": 868,
          "cds_end": null,
          "cds_length": 5586,
          "cdna_start": 1212,
          "cdna_end": null,
          "cdna_length": 7680,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "ENST00000689940.1",
          "protein_id": "ENSP00000508452.1",
          "transcript_support_level": null,
          "aa_start": 278,
          "aa_end": null,
          "aa_length": 1847,
          "cds_start": 832,
          "cds_end": null,
          "cds_length": 5544,
          "cdna_start": 990,
          "cdna_end": null,
          "cdna_length": 7452,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.694T>C",
          "hgvs_p": "p.Ser232Pro",
          "transcript": "ENST00000689258.1",
          "protein_id": "ENSP00000510475.1",
          "transcript_support_level": null,
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          "cds_start": 694,
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          "cdna_start": 835,
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          "mane_select": null,
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        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
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          "exon_count": 40,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
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          "hgvs_c": "c.868T>C",
          "hgvs_p": "p.Ser290Pro",
          "transcript": "NM_001425069.1",
          "protein_id": "NP_001411998.1",
          "transcript_support_level": null,
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          "feature": null
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        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "NM_001386342.1",
          "protein_id": "NP_001373271.1",
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          "cds_start": 832,
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          "cdna_start": 982,
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          "mane_select": null,
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "gene_symbol": "SBF2",
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        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 5,
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          "exon_count": 36,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.553T>C",
          "hgvs_p": "p.Ser185Pro",
          "transcript": "ENST00000688344.1",
          "protein_id": "ENSP00000509987.1",
          "transcript_support_level": null,
          "aa_start": 185,
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          "cds_start": 553,
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          "cdna_length": 6763,
          "mane_select": null,
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
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          "consequences": [
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          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "XM_047427657.1",
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          "cdna_start": 982,
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_count": 29,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
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          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
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        {
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          "strand": false,
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          ],
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          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro",
          "transcript": "XM_047427658.1",
          "protein_id": "XP_047283614.1",
          "transcript_support_level": null,
          "aa_start": 278,
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          "cds_start": 832,
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          "cds_length": 3351,
          "cdna_start": 982,
          "cdna_end": null,
          "cdna_length": 5835,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "SBF2",
          "gene_hgnc_id": 2135,
          "hgvs_c": "c.832T>C",
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        {
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          "transcript": "ENST00000693022.1",
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      ],
      "gene_symbol": "SBF2",
      "gene_hgnc_id": 2135,
      "dbsnp": "rs746749228",
      "frequency_reference_population": 0.0000024996718,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 4,
      "gnomad_exomes_af": 0.00000207181,
      "gnomad_genomes_af": 0.0000065703,
      "gnomad_exomes_ac": 3,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.9634783864021301,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.03999999910593033,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.666,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.8615,
      "alphamissense_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.08,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 8.915,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.04,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 6,
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM2,PP3_Strong",
      "acmg_by_gene": [
        {
          "score": 6,
          "benign_score": 0,
          "pathogenic_score": 6,
          "criteria": [
            "PM2",
            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000256190.13",
          "gene_symbol": "SBF2",
          "hgnc_id": 2135,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.832T>C",
          "hgvs_p": "p.Ser278Pro"
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}