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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-19186276-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=19186276&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 19186276,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000265968.9",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.354G>A",
"hgvs_p": "p.Glu118Glu",
"transcript": "NM_003476.5",
"protein_id": "NP_003467.1",
"transcript_support_level": null,
"aa_start": 118,
"aa_end": null,
"aa_length": 194,
"cds_start": 354,
"cds_end": null,
"cds_length": 585,
"cdna_start": 412,
"cdna_end": null,
"cdna_length": 1283,
"mane_select": "ENST00000265968.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.354G>A",
"hgvs_p": "p.Glu118Glu",
"transcript": "ENST00000265968.9",
"protein_id": "ENSP00000265968.3",
"transcript_support_level": 1,
"aa_start": 118,
"aa_end": null,
"aa_length": 194,
"cds_start": 354,
"cds_end": null,
"cds_length": 585,
"cdna_start": 412,
"cdna_end": null,
"cdna_length": 1283,
"mane_select": "NM_003476.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.354G>A",
"hgvs_p": "p.Glu118Glu",
"transcript": "ENST00000533783.2",
"protein_id": "ENSP00000431813.1",
"transcript_support_level": 1,
"aa_start": 118,
"aa_end": null,
"aa_length": 194,
"cds_start": 354,
"cds_end": null,
"cds_length": 585,
"cdna_start": 593,
"cdna_end": null,
"cdna_length": 1457,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.185G>A",
"hgvs_p": "p.Arg62Lys",
"transcript": "NM_001369404.1",
"protein_id": "NP_001356333.1",
"transcript_support_level": null,
"aa_start": 62,
"aa_end": null,
"aa_length": 150,
"cds_start": 185,
"cds_end": null,
"cds_length": 453,
"cdna_start": 243,
"cdna_end": null,
"cdna_length": 1114,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.185G>A",
"hgvs_p": "p.Arg62Lys",
"transcript": "ENST00000649842.1",
"protein_id": "ENSP00000497531.1",
"transcript_support_level": null,
"aa_start": 62,
"aa_end": null,
"aa_length": 150,
"cds_start": 185,
"cds_end": null,
"cds_length": 453,
"cdna_start": 249,
"cdna_end": null,
"cdna_length": 735,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.354G>A",
"hgvs_p": "p.Glu118Glu",
"transcript": "ENST00000649235.1",
"protein_id": "ENSP00000497388.1",
"transcript_support_level": null,
"aa_start": 118,
"aa_end": null,
"aa_length": 194,
"cds_start": 354,
"cds_end": null,
"cds_length": 585,
"cdna_start": 579,
"cdna_end": null,
"cdna_length": 1067,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.282-1231G>A",
"hgvs_p": null,
"transcript": "ENST00000647990.1",
"protein_id": "ENSP00000496798.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 162,
"cds_start": -4,
"cds_end": null,
"cds_length": 489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1009,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"hgvs_c": "c.113-1231G>A",
"hgvs_p": null,
"transcript": "ENST00000648719.1",
"protein_id": "ENSP00000497633.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 59,
"cds_start": -4,
"cds_end": null,
"cds_length": 180,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 890,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CSRP3",
"gene_hgnc_id": 2472,
"dbsnp": "rs876657767",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.14210736751556396,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.33,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.312,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP5,BP4,BP7",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 2,
"pathogenic_score": 3,
"criteria": [
"PM2",
"PP5",
"BP4",
"BP7"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000265968.9",
"gene_symbol": "CSRP3",
"hgnc_id": 2472,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD,SD",
"hgvs_c": "c.354G>A",
"hgvs_p": "p.Glu118Glu"
}
],
"clinvar_disease": "Primary dilated cardiomyopathy",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Primary dilated cardiomyopathy",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}