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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-40797556-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=40797556&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 40797556,
"ref": "C",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000528697.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-407+136079G>T",
"hgvs_p": null,
"transcript": "NM_001258419.2",
"protein_id": "NP_001245348.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2801,
"mane_select": "ENST00000528697.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-407+136079G>T",
"hgvs_p": null,
"transcript": "ENST00000528697.6",
"protein_id": "ENSP00000437132.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2801,
"mane_select": "NM_001258419.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-326-149278G>T",
"hgvs_p": null,
"transcript": "ENST00000530763.5",
"protein_id": "ENSP00000434761.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2669,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-326-149278G>T",
"hgvs_p": null,
"transcript": "NM_020929.3",
"protein_id": "NP_065980.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2632,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "n.507+136079G>T",
"hgvs_p": null,
"transcript": "ENST00000534577.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 562,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-407+136079G>T",
"hgvs_p": null,
"transcript": "XM_011520238.4",
"protein_id": "XP_011518540.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3023,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-473+136079G>T",
"hgvs_p": null,
"transcript": "XM_011520239.4",
"protein_id": "XP_011518541.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3089,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-327+136079G>T",
"hgvs_p": null,
"transcript": "XM_011520240.4",
"protein_id": "XP_011518542.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2943,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-354+136079G>T",
"hgvs_p": null,
"transcript": "XM_011520243.4",
"protein_id": "XP_011518545.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2970,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-274+136079G>T",
"hgvs_p": null,
"transcript": "XM_011520244.4",
"protein_id": "XP_011518546.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2890,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-407+136083G>T",
"hgvs_p": null,
"transcript": "XM_017018070.3",
"protein_id": "XP_016873559.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 640,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3019,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-393+136079G>T",
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"transcript": "XM_017018071.3",
"protein_id": "XP_016873560.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-468+136079G>T",
"hgvs_p": null,
"transcript": "XM_017018072.3",
"protein_id": "XP_016873561.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-327+136079G>T",
"hgvs_p": null,
"transcript": "XM_017018073.3",
"protein_id": "XP_016873562.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 2,
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"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-274+136079G>T",
"hgvs_p": null,
"transcript": "XM_017018075.3",
"protein_id": "XP_016873564.1",
"transcript_support_level": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 2,
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"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-354+136079G>T",
"hgvs_p": null,
"transcript": "XM_017018077.3",
"protein_id": "XP_016873566.1",
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},
{
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"intron_variant"
],
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"exon_count": 6,
"intron_rank": 3,
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"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-274+136083G>T",
"hgvs_p": null,
"transcript": "XM_017018079.3",
"protein_id": "XP_016873568.1",
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"aa_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-473+136083G>T",
"hgvs_p": null,
"transcript": "XM_047427349.1",
"protein_id": "XP_047283305.1",
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"cdna_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
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"hgvs_c": "c.-407+136079G>T",
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"transcript": "XM_047427350.1",
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},
{
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],
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"intron_rank": 2,
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"gene_symbol": "LRRC4C",
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"hgvs_c": "c.-327+136079G>T",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"hgvs_c": "c.-388+136079G>T",
"hgvs_p": null,
"transcript": "XM_047427352.1",
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"biotype": null,
"feature": null
}
],
"gene_symbol": "LRRC4C",
"gene_hgnc_id": 29317,
"dbsnp": "rs10837504",
"frequency_reference_population": 0.30242202,
"hom_count_reference_population": 10207,
"allele_count_reference_population": 45950,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.302422,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 45950,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 10207,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -1,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -1,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.699,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000528697.6",
"gene_symbol": "LRRC4C",
"hgnc_id": 29317,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.-407+136079G>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}