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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-64219313-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=64219313&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 64219313,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000345728.10",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "NM_031471.6",
"protein_id": "NP_113659.3",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 957,
"cdna_end": null,
"cdna_length": 2499,
"mane_select": "ENST00000345728.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000345728.10",
"protein_id": "ENSP00000339950.5",
"transcript_support_level": 1,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 957,
"cdna_end": null,
"cdna_length": 2499,
"mane_select": "NM_031471.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000279227.10",
"protein_id": "ENSP00000279227.5",
"transcript_support_level": 1,
"aa_start": 283,
"aa_end": null,
"aa_length": 667,
"cds_start": 849,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 1008,
"cdna_end": null,
"cdna_length": 2562,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.870G>A",
"hgvs_p": "p.Glu290Glu",
"transcript": "ENST00000698865.1",
"protein_id": "ENSP00000513992.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 670,
"cds_start": 870,
"cds_end": null,
"cds_length": 2013,
"cdna_start": 976,
"cdna_end": null,
"cdna_length": 2502,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "NM_001382362.1",
"protein_id": "NP_001369291.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 667,
"cds_start": 849,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 954,
"cdna_end": null,
"cdna_length": 2508,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "NM_178443.3",
"protein_id": "NP_848537.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 667,
"cds_start": 849,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 957,
"cdna_end": null,
"cdna_length": 2511,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698860.1",
"protein_id": "ENSP00000513988.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 667,
"cds_start": 849,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 1005,
"cdna_end": null,
"cdna_length": 2558,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "NM_001382361.1",
"protein_id": "NP_001369290.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 954,
"cdna_end": null,
"cdna_length": 2496,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "NM_001382448.1",
"protein_id": "NP_001369377.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 1054,
"cdna_end": null,
"cdna_length": 2596,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000544997.6",
"protein_id": "ENSP00000445778.2",
"transcript_support_level": 3,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 1043,
"cdna_end": null,
"cdna_length": 2590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698852.1",
"protein_id": "ENSP00000513984.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 2288,
"cdna_end": null,
"cdna_length": 3772,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698861.1",
"protein_id": "ENSP00000513989.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 983,
"cdna_end": null,
"cdna_length": 2520,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698863.1",
"protein_id": "ENSP00000513991.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 1207,
"cdna_end": null,
"cdna_length": 2754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698870.1",
"protein_id": "ENSP00000513996.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 663,
"cds_start": 849,
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"cds_length": 1992,
"cdna_start": 998,
"cdna_end": null,
"cdna_length": 2405,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698878.1",
"protein_id": "ENSP00000514000.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 661,
"cds_start": 849,
"cds_end": null,
"cds_length": 1986,
"cdna_start": 962,
"cdna_end": null,
"cdna_length": 2438,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698868.1",
"protein_id": "ENSP00000513994.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 618,
"cds_start": 849,
"cds_end": null,
"cds_length": 1857,
"cdna_start": 936,
"cdna_end": null,
"cdna_length": 2334,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Glu283Glu",
"transcript": "ENST00000698869.1",
"protein_id": "ENSP00000513995.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 585,
"cds_start": 849,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 934,
"cdna_end": null,
"cdna_length": 2173,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.309G>A",
"hgvs_p": "p.Glu103Glu",
"transcript": "NM_001382364.1",
"protein_id": "NP_001369293.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 487,
"cds_start": 309,
"cds_end": null,
"cds_length": 1464,
"cdna_start": 890,
"cdna_end": null,
"cdna_length": 2444,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.309G>A",
"hgvs_p": "p.Glu103Glu",
"transcript": "NM_001382363.1",
"protein_id": "NP_001369292.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 483,
"cds_start": 309,
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"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.309G>A",
"hgvs_p": "p.Glu103Glu",
"transcript": "ENST00000541252.2",
"protein_id": "ENSP00000438885.2",
"transcript_support_level": 3,
"aa_start": 103,
"aa_end": null,
"aa_length": 483,
"cds_start": 309,
"cds_end": null,
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"cdna_start": 824,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.309G>A",
"hgvs_p": "p.Glu103Glu",
"transcript": "ENST00000698874.1",
"protein_id": "ENSP00000513999.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 483,
"cds_start": 309,
"cds_end": null,
"cds_length": 1452,
"cdna_start": 933,
"cdna_end": null,
"cdna_length": 2475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "c.309G>A",
"hgvs_p": "p.Glu103Glu",
"transcript": "XM_047427676.1",
"protein_id": "XP_047283632.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 487,
"cds_start": 309,
"cds_end": null,
"cds_length": 1464,
"cdna_start": 417,
"cdna_end": null,
"cdna_length": 1971,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT3",
"gene_hgnc_id": 23151,
"hgvs_c": "n.1817G>A",
"hgvs_p": null,
"transcript": "ENST00000540554.2",
"protein_id": null,
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}