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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-65525631-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=65525631&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 65525631,
      "ref": "C",
      "alt": "T",
      "effect": "stop_gained",
      "transcript": "NM_020680.4",
      "consequences": [
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_020680.4",
          "protein_id": "NP_065731.3",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 808,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2427,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000270176.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_020680.4"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000270176.10",
          "protein_id": "ENSP00000270176.5",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 808,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2427,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_020680.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000270176.10"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000420247.6",
          "protein_id": "ENSP00000408192.2",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 791,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2376,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000420247.6"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000524944.5",
          "protein_id": "ENSP00000432175.1",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 775,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2328,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000524944.5"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872768.1",
          "protein_id": "ENSP00000542827.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 819,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2460,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872768.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000939459.1",
          "protein_id": "ENSP00000609518.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 814,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2445,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939459.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001425179.1",
          "protein_id": "NP_001412108.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001425179.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001425180.1",
          "protein_id": "NP_001412109.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001425180.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001425181.1",
          "protein_id": "NP_001412110.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001425181.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872762.1",
          "protein_id": "ENSP00000542821.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872762.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000939456.1",
          "protein_id": "ENSP00000609515.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939456.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001425182.1",
          "protein_id": "NP_001412111.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 806,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2421,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001425182.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872776.1",
          "protein_id": "ENSP00000542835.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 806,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2421,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872776.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872781.1",
          "protein_id": "ENSP00000542840.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 806,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2421,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872781.1"
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
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          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000939455.1",
          "protein_id": "ENSP00000609514.1",
          "transcript_support_level": null,
          "aa_start": 57,
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          "aa_length": 806,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2421,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939455.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872771.1",
          "protein_id": "ENSP00000542830.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 798,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2397,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000872771.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000971861.1",
          "protein_id": "ENSP00000641920.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 796,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2391,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Q",
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          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "ENST00000872775.1",
          "protein_id": "ENSP00000542834.1",
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          "cds_start": 169,
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          "cds_length": 2385,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000872775.1"
        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001048218.2",
          "protein_id": "NP_001041683.1",
          "transcript_support_level": null,
          "aa_start": 57,
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          "cds_start": 169,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001048218.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SCYL1",
          "gene_hgnc_id": 14372,
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*",
          "transcript": "NM_001425183.1",
          "protein_id": "NP_001412112.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 790,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 2373,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001425183.1"
        },
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      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 11,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5",
      "acmg_by_gene": [
        {
          "score": 11,
          "benign_score": 0,
          "pathogenic_score": 11,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_020680.4",
          "gene_symbol": "SCYL1",
          "hgnc_id": 14372,
          "effects": [
            "stop_gained"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.169C>T",
          "hgvs_p": "p.Gln57*"
        }
      ],
      "clinvar_disease": "Acute infantile liver failure-cerebellar ataxia-peripheral sensory motor neuropathy syndrome",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "Acute infantile liver failure-cerebellar ataxia-peripheral sensory motor neuropathy syndrome",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}