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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-10124484-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=10124484&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 10124484,
      "ref": "A",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "ENST00000304084.13",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.492+813T>G",
          "hgvs_p": null,
          "transcript": "NM_197947.3",
          "protein_id": "NP_922938.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 247,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 744,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2542,
          "mane_select": "ENST00000304084.13",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.492+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000304084.13",
          "protein_id": "ENSP00000302569.8",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 247,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 744,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2542,
          "mane_select": "NM_197947.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.354+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000353231.9",
          "protein_id": "ENSP00000266456.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 201,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2446,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.492+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000533022.5",
          "protein_id": "ENSP00000431461.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 189,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 625,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.255+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000396484.6",
          "protein_id": "ENSP00000379743.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 168,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 507,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1000,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.354+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000298523.9",
          "protein_id": "ENSP00000298523.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 143,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 432,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1154,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "n.104-1121T>G",
          "hgvs_p": null,
          "transcript": "ENST00000349926.9",
          "protein_id": "ENSP00000344723.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 355,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "n.*278+603T>G",
          "hgvs_p": null,
          "transcript": "ENST00000465100.5",
          "protein_id": "ENSP00000436923.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 881,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "n.492+813T>G",
          "hgvs_p": null,
          "transcript": "ENST00000529761.5",
          "protein_id": "ENSP00000432876.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1592,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "n.1792+603T>G",
          "hgvs_p": null,
          "transcript": "ENST00000534609.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 3725,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.354+813T>G",
          "hgvs_p": null,
          "transcript": "NM_022570.5",
          "protein_id": "NP_072092.2",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 201,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 606,
          "cdna_start": null,
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          "cdna_length": 2404,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.492+813T>G",
          "hgvs_p": null,
          "transcript": "NM_197948.3",
          "protein_id": "NP_922939.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 189,
          "cds_start": -4,
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        },
        {
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          "canonical": false,
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          "consequences": [
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          "exon_rank": null,
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          "exon_count": 4,
          "intron_rank": 2,
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          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.255+813T>G",
          "hgvs_p": null,
          "transcript": "NM_197950.3",
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          "cds_start": -4,
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          "cdna_start": null,
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        },
        {
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          "consequences": [
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          ],
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          "intron_rank": 3,
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          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.354+813T>G",
          "hgvs_p": null,
          "transcript": "NM_197949.3",
          "protein_id": "NP_922940.1",
          "transcript_support_level": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "biotype": null,
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        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 7,
          "intron_rank": 5,
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          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
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        {
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          "gene_symbol": "ENSG00000299754",
          "gene_hgnc_id": null,
          "hgvs_c": "n.164-8802A>C",
          "hgvs_p": null,
          "transcript": "ENST00000766122.1",
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          "cdna_length": 492,
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        },
        {
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          "consequences": [
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          ],
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          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000299754",
          "gene_hgnc_id": null,
          "hgvs_c": "n.156-7201A>C",
          "hgvs_p": null,
          "transcript": "ENST00000766123.1",
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        },
        {
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          "canonical": false,
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000299754",
          "gene_hgnc_id": null,
          "hgvs_c": "n.152-6597A>C",
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          "gene_symbol": "ENSG00000299754",
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          "hgvs_c": "n.35-5153A>C",
          "hgvs_p": null,
          "transcript": "ENST00000766125.1",
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          "exon_count": 7,
          "intron_rank": 5,
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          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "n.696+603T>G",
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          "transcript": "NR_125336.2",
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        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 5,
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          "gene_symbol": "CLEC7A",
          "gene_hgnc_id": 14558,
          "hgvs_c": "c.492+813T>G",
          "hgvs_p": null,
          "transcript": "XM_047429359.1",
          "protein_id": "XP_047285315.1",
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      "computational_source_selected": "BayesDel_noAF",
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      "acmg_classification": "Benign",
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          "verdict": "Benign",
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          "inheritance_mode": "",
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          "verdict": "Benign",
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          "effects": [
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          ],
          "inheritance_mode": "",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
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      "custom_annotations": null
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  ],
  "message": null
}