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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-123156306-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=123156306&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 123156306,
"ref": "C",
"alt": "A",
"effect": "3_prime_UTR_variant",
"transcript": "NM_022782.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "NM_022782.4",
"protein_id": "NP_073619.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1183,
"cds_start": null,
"cds_end": null,
"cds_length": 3552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000606320.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_022782.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000606320.6",
"protein_id": "ENSP00000475489.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1183,
"cds_start": null,
"cds_end": null,
"cds_length": 3552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_022782.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000606320.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.553-3681G>T",
"hgvs_p": null,
"transcript": "ENST00000541603.6",
"protein_id": "ENSP00000446362.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 214,
"cds_start": null,
"cds_end": null,
"cds_length": 645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000541603.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000908508.1",
"protein_id": "ENSP00000578567.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1182,
"cds_start": null,
"cds_end": null,
"cds_length": 3549,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908508.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000541076.6",
"protein_id": "ENSP00000445859.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1153,
"cds_start": null,
"cds_end": null,
"cds_length": 3462,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000541076.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000908507.1",
"protein_id": "ENSP00000578566.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1141,
"cds_start": null,
"cds_end": null,
"cds_length": 3426,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908507.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000918121.1",
"protein_id": "ENSP00000588180.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1134,
"cds_start": null,
"cds_end": null,
"cds_length": 3405,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000918121.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000962748.1",
"protein_id": "ENSP00000632807.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1111,
"cds_start": null,
"cds_end": null,
"cds_length": 3336,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962748.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "ENST00000908509.1",
"protein_id": "ENSP00000578568.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1107,
"cds_start": null,
"cds_end": null,
"cds_length": 3324,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908509.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_017018673.2",
"protein_id": "XP_016874162.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1183,
"cds_start": null,
"cds_end": null,
"cds_length": 3552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017018673.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428055.1",
"protein_id": "XP_047284011.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1183,
"cds_start": null,
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"cds_length": 3552,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047428055.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428056.1",
"protein_id": "XP_047284012.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1183,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047428056.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428058.1",
"protein_id": "XP_047284014.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1149,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047428058.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
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"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
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"hgvs_c": "c.*501G>T",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428060.1",
"protein_id": "XP_047284016.1",
"transcript_support_level": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047428060.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
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"hgvs_c": "c.*501G>T",
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"transcript": "XM_047428061.1",
"protein_id": "XP_047284017.1",
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"biotype": "protein_coding",
"feature": "XM_047428061.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428063.1",
"protein_id": "XP_047284019.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047428063.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_017018677.2",
"protein_id": "XP_016874166.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"feature": "XM_017018677.2"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428065.1",
"protein_id": "XP_047284021.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
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"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
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"transcript": "XM_047428066.1",
"protein_id": "XP_047284022.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428067.1",
"protein_id": "XP_047284023.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047428067.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MPHOSPH9",
"gene_hgnc_id": 7215,
"hgvs_c": "c.*501G>T",
"hgvs_p": null,
"transcript": "XM_047428069.1",
"protein_id": "XP_047284025.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1031,
"cds_start": null,
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"cds_length": 3096,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047428069.1"
},
{
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"canonical": false,
"protein_coding": true,
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}
],
"message": null
}