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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-25191781-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=25191781&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 25191781,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000395987.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.4-1150C>G",
"hgvs_p": null,
"transcript": "NM_018272.5",
"protein_id": "NP_060742.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 722,
"cds_start": -4,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2510,
"mane_select": "ENST00000395987.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.4-1150C>G",
"hgvs_p": null,
"transcript": "ENST00000395987.8",
"protein_id": "ENSP00000379310.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 722,
"cds_start": -4,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2510,
"mane_select": "NM_018272.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.3+3295C>G",
"hgvs_p": null,
"transcript": "ENST00000320267.13",
"protein_id": "ENSP00000313141.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 716,
"cds_start": -4,
"cds_end": null,
"cds_length": 2151,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2361,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.178-1150C>G",
"hgvs_p": null,
"transcript": "ENST00000354189.9",
"protein_id": "ENSP00000346126.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 690,
"cds_start": -4,
"cds_end": null,
"cds_length": 2073,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2445,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-173-1150C>G",
"hgvs_p": null,
"transcript": "ENST00000395990.6",
"protein_id": "ENSP00000379313.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 676,
"cds_start": -4,
"cds_end": null,
"cds_length": 2031,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2417,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.3+3295C>G",
"hgvs_p": null,
"transcript": "NM_001082973.3",
"protein_id": "NP_001076442.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 716,
"cds_start": -4,
"cds_end": null,
"cds_length": 2151,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2492,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.178-1150C>G",
"hgvs_p": null,
"transcript": "NM_001082972.3",
"protein_id": "NP_001076441.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 690,
"cds_start": -4,
"cds_end": null,
"cds_length": 2073,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2638,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-173-1150C>G",
"hgvs_p": null,
"transcript": "NM_001204102.3",
"protein_id": "NP_001191031.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 676,
"cds_start": -4,
"cds_end": null,
"cds_length": 2031,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2548,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-292+3295C>G",
"hgvs_p": null,
"transcript": "NM_001319978.2",
"protein_id": "NP_001306907.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 676,
"cds_start": -4,
"cds_end": null,
"cds_length": 2031,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2666,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-207+3295C>G",
"hgvs_p": null,
"transcript": "NM_001352061.2",
"protein_id": "NP_001338990.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 676,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 1,
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"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.3+3295C>G",
"hgvs_p": null,
"transcript": "NM_001204101.3",
"protein_id": "NP_001191030.2",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "DNAI7",
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"hgvs_c": "c.3+3295C>G",
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"transcript": "ENST00000545133.5",
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},
{
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],
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"gene_symbol": "DNAI7",
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"hgvs_c": "c.3+3295C>G",
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"transcript": "NM_001352062.2",
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},
{
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],
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"gene_symbol": "DNAI7",
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"hgvs_c": "c.4-1150C>G",
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},
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],
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},
{
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"strand": false,
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],
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"gene_symbol": "DNAI7",
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},
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],
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"gene_symbol": "DNAI7",
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"hgvs_c": "c.-309-1150C>G",
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},
{
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"consequences": [
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],
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"intron_rank": 1,
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"gene_symbol": "DNAI7",
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"hgvs_c": "c.-33+3295C>G",
"hgvs_p": null,
"transcript": "ENST00000674567.1",
"protein_id": "ENSP00000502075.1",
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},
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],
"exon_rank": null,
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"gene_symbol": "DNAI7",
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],
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},
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],
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},
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"strand": false,
"consequences": [
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],
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"intron_rank": 1,
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"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-33+3295C>G",
"hgvs_p": null,
"transcript": "NM_001352068.2",
"protein_id": "NP_001338997.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 2,
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"gene_symbol": "DNAI7",
"gene_hgnc_id": 29599,
"hgvs_c": "c.-118+913C>G",
"hgvs_p": null,
"transcript": "ENST00000554347.1",
"protein_id": "ENSP00000451232.1",
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