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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-2664915-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=2664915&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 2664915,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_199460.4",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "NM_000719.7",
          "protein_id": "NP_000710.5",
          "transcript_support_level": null,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000399655.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000719.7"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "NM_001167623.2",
          "protein_id": "NP_001161095.1",
          "transcript_support_level": null,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "ENST00000399603.6",
          "biotype": "protein_coding",
          "feature": "NM_001167623.2"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000399603.6",
          "protein_id": "ENSP00000382512.1",
          "transcript_support_level": 5,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "NM_001167623.2",
          "biotype": "protein_coding",
          "feature": "ENST00000399603.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000399655.6",
          "protein_id": "ENSP00000382563.1",
          "transcript_support_level": 1,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000719.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000399655.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4557G>A",
          "hgvs_p": "p.Thr1519Thr",
          "transcript": "ENST00000682544.1",
          "protein_id": "ENSP00000507184.1",
          "transcript_support_level": null,
          "aa_start": 1519,
          "aa_end": null,
          "aa_length": 2251,
          "cds_start": 4557,
          "cds_end": null,
          "cds_length": 6756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682544.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000406454.8",
          "protein_id": "ENSP00000385896.3",
          "transcript_support_level": 5,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2209,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6630,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000406454.8"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4290G>A",
          "hgvs_p": "p.Thr1430Thr",
          "transcript": "ENST00000399634.6",
          "protein_id": "ENSP00000382542.2",
          "transcript_support_level": 5,
          "aa_start": 1430,
          "aa_end": null,
          "aa_length": 2198,
          "cds_start": 4290,
          "cds_end": null,
          "cds_length": 6597,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000399634.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4488G>A",
          "hgvs_p": "p.Thr1496Thr",
          "transcript": "ENST00000683824.1",
          "protein_id": "ENSP00000507867.1",
          "transcript_support_level": null,
          "aa_start": 1496,
          "aa_end": null,
          "aa_length": 2193,
          "cds_start": 4488,
          "cds_end": null,
          "cds_length": 6582,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683824.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4467G>A",
          "hgvs_p": "p.Thr1489Thr",
          "transcript": "ENST00000347598.9",
          "protein_id": "ENSP00000266376.6",
          "transcript_support_level": 1,
          "aa_start": 1489,
          "aa_end": null,
          "aa_length": 2186,
          "cds_start": 4467,
          "cds_end": null,
          "cds_length": 6561,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000347598.9"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4389G>A",
          "hgvs_p": "p.Thr1463Thr",
          "transcript": "ENST00000344100.7",
          "protein_id": "ENSP00000341092.3",
          "transcript_support_level": 1,
          "aa_start": 1463,
          "aa_end": null,
          "aa_length": 2179,
          "cds_start": 4389,
          "cds_end": null,
          "cds_length": 6540,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000344100.7"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000327702.12",
          "protein_id": "ENSP00000329877.7",
          "transcript_support_level": 1,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2173,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6522,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000327702.12"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000399617.6",
          "protein_id": "ENSP00000382526.1",
          "transcript_support_level": 5,
          "aa_start": 1441,
          "aa_end": null,
          "aa_length": 2173,
          "cds_start": 4323,
          "cds_end": null,
          "cds_length": 6522,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000399617.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4413G>A",
          "hgvs_p": "p.Thr1471Thr",
          "transcript": "ENST00000682462.1",
          "protein_id": "ENSP00000507105.1",
          "transcript_support_level": null,
          "aa_start": 1471,
          "aa_end": null,
          "aa_length": 2168,
          "cds_start": 4413,
          "cds_end": null,
          "cds_length": 6507,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682462.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4413G>A",
          "hgvs_p": "p.Thr1471Thr",
          "transcript": "ENST00000683781.1",
          "protein_id": "ENSP00000507434.1",
          "transcript_support_level": null,
          "aa_start": 1471,
          "aa_end": null,
          "aa_length": 2168,
          "cds_start": 4413,
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          "cds_length": 6507,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683781.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4413G>A",
          "hgvs_p": "p.Thr1471Thr",
          "transcript": "ENST00000683840.1",
          "protein_id": "ENSP00000507612.1",
          "transcript_support_level": null,
          "aa_start": 1471,
          "aa_end": null,
          "aa_length": 2168,
          "cds_start": 4413,
          "cds_end": null,
          "cds_length": 6507,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683840.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4413G>A",
          "hgvs_p": "p.Thr1471Thr",
          "transcript": "ENST00000683956.1",
          "protein_id": "ENSP00000506882.1",
          "transcript_support_level": null,
          "aa_start": 1471,
          "aa_end": null,
          "aa_length": 2168,
          "cds_start": 4413,
          "cds_end": null,
          "cds_length": 6507,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683956.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4407G>A",
          "hgvs_p": "p.Thr1469Thr",
          "transcript": "ENST00000399638.5",
          "protein_id": "ENSP00000382547.1",
          "transcript_support_level": 1,
          "aa_start": 1469,
          "aa_end": null,
          "aa_length": 2166,
          "cds_start": 4407,
          "cds_end": null,
          "cds_length": 6501,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000399638.5"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4398G>A",
          "hgvs_p": "p.Thr1466Thr",
          "transcript": "ENST00000335762.10",
          "protein_id": "ENSP00000336982.5",
          "transcript_support_level": 5,
          "aa_start": 1466,
          "aa_end": null,
          "aa_length": 2163,
          "cds_start": 4398,
          "cds_end": null,
          "cds_length": 6492,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000335762.10"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4383G>A",
          "hgvs_p": "p.Thr1461Thr",
          "transcript": "ENST00000399606.5",
          "protein_id": "ENSP00000382515.1",
          "transcript_support_level": 1,
          "aa_start": 1461,
          "aa_end": null,
          "aa_length": 2158,
          "cds_start": 4383,
          "cds_end": null,
          "cds_length": 6477,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000399606.5"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.4323G>A",
          "hgvs_p": "p.Thr1441Thr",
          "transcript": "ENST00000399621.5",
          "protein_id": "ENSP00000382530.1",
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        {
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          "exon_count": 18,
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          "gene_symbol": "CACNA1C",
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          "hgvs_c": "n.826G>A",
          "hgvs_p": null,
          "transcript": "ENST00000684467.1",
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          "biotype": "pseudogene",
          "feature": "ENST00000684467.1"
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      ],
      "gene_symbol": "CACNA1C",
      "gene_hgnc_id": 1390,
      "dbsnp": "rs753892795",
      "frequency_reference_population": 0.000019829049,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 32,
      "gnomad_exomes_af": 0.0000205257,
      "gnomad_genomes_af": 0.0000131394,
      "gnomad_exomes_ac": 30,
      "gnomad_genomes_ac": 2,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.8600000143051147,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.86,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -4.35,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -17,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS2",
      "acmg_by_gene": [
        {
          "score": -17,
          "benign_score": 17,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_199460.4",
          "gene_symbol": "CACNA1C",
          "hgnc_id": 1390,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.4467G>A",
          "hgvs_p": "p.Thr1489Thr"
        }
      ],
      "clinvar_disease": "Cardiovascular phenotype,Long QT syndrome,not provided",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2 B:1",
      "phenotype_combined": "not provided|Long QT syndrome|Cardiovascular phenotype",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}