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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-27691297-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=27691297&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 27691297,
"ref": "C",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000228425.11",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 27,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2686-452C>A",
"hgvs_p": null,
"transcript": "NM_003622.4",
"protein_id": "NP_003613.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1005,
"cds_start": -4,
"cds_end": null,
"cds_length": 3018,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5983,
"mane_select": "ENST00000228425.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 27,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2686-452C>A",
"hgvs_p": null,
"transcript": "ENST00000228425.11",
"protein_id": "ENSP00000228425.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1005,
"cds_start": -4,
"cds_end": null,
"cds_length": 3018,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5983,
"mane_select": "NM_003622.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2704-452C>A",
"hgvs_p": null,
"transcript": "ENST00000318304.12",
"protein_id": "ENSP00000314724.8",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1011,
"cds_start": -4,
"cds_end": null,
"cds_length": 3036,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6001,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2611-452C>A",
"hgvs_p": null,
"transcript": "ENST00000542629.5",
"protein_id": "ENSP00000443442.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 980,
"cds_start": -4,
"cds_end": null,
"cds_length": 2943,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3208,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2245-452C>A",
"hgvs_p": null,
"transcript": "ENST00000537927.5",
"protein_id": "ENSP00000445425.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 858,
"cds_start": -4,
"cds_end": null,
"cds_length": 2577,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5719,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2704-452C>A",
"hgvs_p": null,
"transcript": "NM_177444.3",
"protein_id": "NP_803193.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1011,
"cds_start": -4,
"cds_end": null,
"cds_length": 3036,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6001,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2611-452C>A",
"hgvs_p": null,
"transcript": "NM_001198916.2",
"protein_id": "NP_001185845.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 980,
"cds_start": -4,
"cds_end": null,
"cds_length": 2943,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5908,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2245-452C>A",
"hgvs_p": null,
"transcript": "NM_001198915.2",
"protein_id": "NP_001185844.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 858,
"cds_start": -4,
"cds_end": null,
"cds_length": 2577,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5696,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 23,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2197-452C>A",
"hgvs_p": null,
"transcript": "ENST00000540114.5",
"protein_id": "ENSP00000444304.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 743,
"cds_start": -4,
"cds_end": null,
"cds_length": 2232,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2645,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.394-452C>A",
"hgvs_p": null,
"transcript": "ENST00000539326.1",
"protein_id": "ENSP00000438174.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 241,
"cds_start": -4,
"cds_end": null,
"cds_length": 726,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 973,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "MRPS35-DT",
"gene_hgnc_id": 55490,
"hgvs_c": "n.314-171G>T",
"hgvs_p": null,
"transcript": "ENST00000740393.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 29,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2779-452C>A",
"hgvs_p": null,
"transcript": "XM_017020056.3",
"protein_id": "XP_016875545.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 30,
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"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2779-452C>A",
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"transcript": "XM_017020057.3",
"protein_id": "XP_016875546.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 28,
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"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2779-452C>A",
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"transcript": "XM_024449232.2",
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},
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],
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"intron_rank": 28,
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"gene_symbol": "PPFIBP1",
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"hgvs_c": "c.2770-452C>A",
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"transcript": "XM_024449233.2",
"protein_id": "XP_024305001.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 27,
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"gene_symbol": "PPFIBP1",
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"hgvs_c": "c.2749-452C>A",
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"transcript": "XM_024449234.2",
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},
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],
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"gene_symbol": "PPFIBP1",
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"hgvs_c": "c.2746-452C>A",
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"transcript": "XM_017020059.3",
"protein_id": "XP_016875548.1",
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},
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],
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"intron_rank": 27,
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"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2746-452C>A",
"hgvs_p": null,
"transcript": "XM_024449235.2",
"protein_id": "XP_024305003.1",
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},
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"strand": true,
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],
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"gene_symbol": "PPFIBP1",
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"hgvs_c": "c.2740-452C>A",
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],
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"gene_symbol": "PPFIBP1",
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},
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],
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},
{
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"protein_coding": true,
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"consequences": [
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],
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"exon_count": 29,
"intron_rank": 26,
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"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2716-452C>A",
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"transcript": "XM_024449237.2",
"protein_id": "XP_024305005.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "PPFIBP1",
"gene_hgnc_id": 9249,
"hgvs_c": "c.2716-452C>A",
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"transcript": "XM_047429750.1",
"protein_id": "XP_047285706.1",
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}
],
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}