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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-9669791-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=9669791&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 9669791,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000290855.11",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "NM_013269.6",
"protein_id": "NP_037401.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 191,
"cds_start": 57,
"cds_end": null,
"cds_length": 576,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5277,
"mane_select": "ENST00000290855.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "ENST00000290855.11",
"protein_id": "ENSP00000290855.6",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 191,
"cds_start": 57,
"cds_end": null,
"cds_length": 576,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5277,
"mane_select": "NM_013269.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "ENST00000261340.11",
"protein_id": "ENSP00000261340.7",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 194,
"cds_start": 57,
"cds_end": null,
"cds_length": 585,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 935,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "ENST00000261339.10",
"protein_id": "ENSP00000261339.6",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 154,
"cds_start": 57,
"cds_end": null,
"cds_length": 465,
"cdna_start": 57,
"cdna_end": null,
"cdna_length": 465,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "ENST00000543300.5",
"protein_id": "ENSP00000443065.1",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 132,
"cds_start": 57,
"cds_end": null,
"cds_length": 399,
"cdna_start": 57,
"cdna_end": null,
"cdna_length": 399,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "ENST00000545918.5",
"protein_id": "ENSP00000444818.1",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 95,
"cds_start": 57,
"cds_end": null,
"cds_length": 288,
"cdna_start": 57,
"cdna_end": null,
"cdna_length": 288,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.57C>T",
"hgvs_p": null,
"transcript": "ENST00000444971.6",
"protein_id": "ENSP00000399744.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1508,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "NM_001004419.5",
"protein_id": "NP_001004419.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 194,
"cds_start": 57,
"cds_end": null,
"cds_length": 585,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5359,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "NM_001197317.3",
"protein_id": "NP_001184246.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 154,
"cds_start": 57,
"cds_end": null,
"cds_length": 465,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5166,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.39C>T",
"hgvs_p": "p.Asn13Asn",
"transcript": "ENST00000466035.6",
"protein_id": "ENSP00000446028.1",
"transcript_support_level": 3,
"aa_start": 13,
"aa_end": null,
"aa_length": 140,
"cds_start": 39,
"cds_end": null,
"cds_length": 423,
"cdna_start": 39,
"cdna_end": null,
"cdna_length": 778,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "NM_001197318.3",
"protein_id": "NP_001184247.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 132,
"cds_start": 57,
"cds_end": null,
"cds_length": 399,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5173,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn",
"transcript": "NM_001197319.3",
"protein_id": "NP_001184248.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 95,
"cds_start": 57,
"cds_end": null,
"cds_length": 288,
"cdna_start": 79,
"cdna_end": null,
"cdna_length": 5062,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.57C>T",
"hgvs_p": null,
"transcript": "ENST00000325960.11",
"protein_id": "ENSP00000371409.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1552,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.57C>T",
"hgvs_p": null,
"transcript": "ENST00000479877.5",
"protein_id": "ENSP00000441653.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1855,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.57C>T",
"hgvs_p": null,
"transcript": "ENST00000492359.6",
"protein_id": "ENSP00000443110.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 541,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.79C>T",
"hgvs_p": null,
"transcript": "NR_036693.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5248,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.159+996C>T",
"hgvs_p": null,
"transcript": "ENST00000487752.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 287,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"hgvs_c": "n.-66+4679C>T",
"hgvs_p": null,
"transcript": "ENST00000536355.5",
"protein_id": "ENSP00000438735.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 571,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CLEC2D",
"gene_hgnc_id": 14351,
"dbsnp": "rs16914640",
"frequency_reference_population": 0.000001240955,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.84993e-7,
"gnomad_genomes_af": 0.00000658788,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8700000047683716,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.87,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.502,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -3,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP7",
"acmg_by_gene": [
{
"score": -3,
"benign_score": 5,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "ENST00000290855.11",
"gene_symbol": "CLEC2D",
"hgnc_id": 14351,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.57C>T",
"hgvs_p": "p.Asn19Asn"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}