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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-27440036-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=27440036&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 27440036,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_152912.5",
      "consequences": [
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "NM_152912.5",
          "protein_id": "NP_690876.3",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000381120.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_152912.5"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000381120.8",
          "protein_id": "ENSP00000370512.3",
          "transcript_support_level": 1,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_152912.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000381120.8"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000405591.3",
          "protein_id": "ENSP00000384659.2",
          "transcript_support_level": 1,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405591.3"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "NM_001166261.2",
          "protein_id": "NP_001159733.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001166261.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "NM_001166262.2",
          "protein_id": "NP_001159734.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001166262.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "NM_001166263.2",
          "protein_id": "NP_001159735.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001166263.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000381116.5",
          "protein_id": "ENSP00000370508.1",
          "transcript_support_level": 5,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000381116.5"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884652.1",
          "protein_id": "ENSP00000554711.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884652.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884653.1",
          "protein_id": "ENSP00000554712.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884653.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884655.1",
          "protein_id": "ENSP00000554714.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884655.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884656.1",
          "protein_id": "ENSP00000554715.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884656.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884657.1",
          "protein_id": "ENSP00000554716.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884657.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884658.1",
          "protein_id": "ENSP00000554717.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884658.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884659.1",
          "protein_id": "ENSP00000554718.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884659.1"
        },
        {
          "aa_ref": "Q",
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
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          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884660.1",
          "protein_id": "ENSP00000554719.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000884660.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884661.1",
          "protein_id": "ENSP00000554720.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000884661.1"
        },
        {
          "aa_ref": "Q",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000884662.1",
          "protein_id": "ENSP00000554721.1",
          "transcript_support_level": null,
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          "aa_end": null,
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          "cds_start": 413,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Q",
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          ],
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000920842.1",
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          "cds_start": 413,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000920842.1"
        },
        {
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          "intron_rank": null,
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          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
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          "transcript": "ENST00000920843.1",
          "protein_id": "ENSP00000590902.1",
          "transcript_support_level": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000920843.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MTIF3",
          "gene_hgnc_id": 29788,
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg",
          "transcript": "ENST00000920844.1",
          "protein_id": "ENSP00000590903.1",
          "transcript_support_level": null,
          "aa_start": 138,
          "aa_end": null,
          "aa_length": 278,
          "cds_start": 413,
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          "cds_length": 837,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000920844.1"
        },
        {
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        {
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        {
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          "gene_symbol": "MTIF3",
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          "hgvs_c": "n.*170A>G",
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          "transcript": "ENST00000484342.2",
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          "biotype": "pseudogene",
          "feature": "ENST00000484342.2"
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      ],
      "gene_symbol": "MTIF3",
      "gene_hgnc_id": 29788,
      "dbsnp": "rs140262959",
      "frequency_reference_population": 0.009792856,
      "hom_count_reference_population": 95,
      "allele_count_reference_population": 15808,
      "gnomad_exomes_af": 0.0100596,
      "gnomad_genomes_af": 0.00723353,
      "gnomad_exomes_ac": 14706,
      "gnomad_genomes_ac": 1102,
      "gnomad_exomes_homalt": 88,
      "gnomad_genomes_homalt": 7,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.00749167799949646,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.142,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0975,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.62,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 5.836,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -16,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS2",
      "acmg_by_gene": [
        {
          "score": -16,
          "benign_score": 16,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_152912.5",
          "gene_symbol": "MTIF3",
          "hgnc_id": 29788,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.413A>G",
          "hgvs_p": "p.Gln138Arg"
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}