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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-100538218-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=100538218&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 100538218,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_001385085.1",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1590C>T",
"hgvs_p": "p.Pro530Pro",
"transcript": "NM_001385089.1",
"protein_id": "NP_001372018.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 612,
"cds_start": 1590,
"cds_end": null,
"cds_length": 1839,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000554140.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385089.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1590C>T",
"hgvs_p": "p.Pro530Pro",
"transcript": "ENST00000554140.3",
"protein_id": "ENSP00000451125.2",
"transcript_support_level": 5,
"aa_start": 530,
"aa_end": null,
"aa_length": 612,
"cds_start": 1590,
"cds_end": null,
"cds_length": 1839,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001385089.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000554140.3"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "ENST00000355173.7",
"protein_id": "ENSP00000347301.2",
"transcript_support_level": 1,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000355173.7"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "ENST00000557378.6",
"protein_id": "ENSP00000450722.2",
"transcript_support_level": 1,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000557378.6"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.2190C>T",
"hgvs_p": "p.Pro730Pro",
"transcript": "ENST00000637716.2",
"protein_id": "ENSP00000490571.1",
"transcript_support_level": 5,
"aa_start": 730,
"aa_end": null,
"aa_length": 812,
"cds_start": 2190,
"cds_end": null,
"cds_length": 2439,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000637716.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1680C>T",
"hgvs_p": "p.Pro560Pro",
"transcript": "NM_001385085.1",
"protein_id": "NP_001372014.1",
"transcript_support_level": null,
"aa_start": 560,
"aa_end": null,
"aa_length": 642,
"cds_start": 1680,
"cds_end": null,
"cds_length": 1929,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385085.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1662C>T",
"hgvs_p": "p.Pro554Pro",
"transcript": "NM_001385086.1",
"protein_id": "NP_001372015.1",
"transcript_support_level": null,
"aa_start": 554,
"aa_end": null,
"aa_length": 636,
"cds_start": 1662,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385086.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1659C>T",
"hgvs_p": "p.Pro553Pro",
"transcript": "NM_001385087.1",
"protein_id": "NP_001372016.1",
"transcript_support_level": null,
"aa_start": 553,
"aa_end": null,
"aa_length": 635,
"cds_start": 1659,
"cds_end": null,
"cds_length": 1908,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385087.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1623C>T",
"hgvs_p": "p.Pro541Pro",
"transcript": "NM_001385088.1",
"protein_id": "NP_001372017.1",
"transcript_support_level": null,
"aa_start": 541,
"aa_end": null,
"aa_length": 623,
"cds_start": 1623,
"cds_end": null,
"cds_length": 1872,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385088.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1623C>T",
"hgvs_p": "p.Pro541Pro",
"transcript": "ENST00000637646.1",
"protein_id": "ENSP00000489826.1",
"transcript_support_level": 5,
"aa_start": 541,
"aa_end": null,
"aa_length": 623,
"cds_start": 1623,
"cds_end": null,
"cds_length": 1872,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000637646.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1572C>T",
"hgvs_p": "p.Pro524Pro",
"transcript": "NM_001385090.1",
"protein_id": "NP_001372019.1",
"transcript_support_level": null,
"aa_start": 524,
"aa_end": null,
"aa_length": 606,
"cds_start": 1572,
"cds_end": null,
"cds_length": 1821,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385090.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1572C>T",
"hgvs_p": "p.Pro524Pro",
"transcript": "ENST00000965912.1",
"protein_id": "ENSP00000635971.1",
"transcript_support_level": null,
"aa_start": 524,
"aa_end": null,
"aa_length": 606,
"cds_start": 1572,
"cds_end": null,
"cds_length": 1821,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965912.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1569C>T",
"hgvs_p": "p.Pro523Pro",
"transcript": "NM_001385091.1",
"protein_id": "NP_001372020.1",
"transcript_support_level": null,
"aa_start": 523,
"aa_end": null,
"aa_length": 605,
"cds_start": 1569,
"cds_end": null,
"cds_length": 1818,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385091.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1554C>T",
"hgvs_p": "p.Pro518Pro",
"transcript": "NM_001385092.1",
"protein_id": "NP_001372021.1",
"transcript_support_level": null,
"aa_start": 518,
"aa_end": null,
"aa_length": 600,
"cds_start": 1554,
"cds_end": null,
"cds_length": 1803,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385092.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "NM_001159531.2",
"protein_id": "NP_001153003.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001159531.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "NM_001385082.1",
"protein_id": "NP_001372011.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385082.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "NM_001385083.1",
"protein_id": "NP_001372012.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385083.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "NM_001385084.1",
"protein_id": "NP_001372013.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001385084.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "NM_020836.4",
"protein_id": "NP_065887.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020836.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "ENST00000553553.6",
"protein_id": "ENSP00000451397.2",
"transcript_support_level": 3,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553553.6"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1533C>T",
"hgvs_p": "p.Pro511Pro",
"transcript": "ENST00000556188.6",
"protein_id": "ENSP00000452157.2",
"transcript_support_level": 3,
"aa_start": 511,
"aa_end": null,
"aa_length": 593,
"cds_start": 1533,
"cds_end": null,
"cds_length": 1782,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000556188.6"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BEGAIN",
"gene_hgnc_id": 24163,
"hgvs_c": "c.1506C>T",
"hgvs_p": "p.Pro502Pro",
"transcript": "NM_001385093.1",
"protein_id": "NP_001372022.1",
"transcript_support_level": null,
"aa_start": 502,
"aa_end": null,
"aa_length": 584,
"cds_start": 1506,
"cds_end": null,
"cds_length": 1755,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
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"phenotype_combined": "not provided",
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}
],
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}