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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-103712977-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=103712977&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 103712977,
      "ref": "T",
      "alt": "C",
      "effect": "3_prime_UTR_variant",
      "transcript": "ENST00000348520.10",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KLC1",
          "gene_hgnc_id": 6387,
          "hgvs_c": "c.*11778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000348520.10",
          "protein_id": "ENSP00000341154.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 573,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1722,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000348520.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-317-46A>G",
          "hgvs_p": null,
          "transcript": "NM_005432.4",
          "protein_id": "NP_005423.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000555055.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_005432.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-317-46A>G",
          "hgvs_p": null,
          "transcript": "ENST00000555055.6",
          "protein_id": "ENSP00000452598.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_005432.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000555055.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-260-1410A>G",
          "hgvs_p": null,
          "transcript": "ENST00000352127.11",
          "protein_id": "ENSP00000343392.7",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000352127.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-298A>G",
          "hgvs_p": null,
          "transcript": "ENST00000881949.1",
          "protein_id": "ENSP00000552008.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000881949.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-363A>G",
          "hgvs_p": null,
          "transcript": "ENST00000881950.1",
          "protein_id": "ENSP00000552009.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000881950.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-363A>G",
          "hgvs_p": null,
          "transcript": "ENST00000920665.1",
          "protein_id": "ENSP00000590724.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920665.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-354A>G",
          "hgvs_p": null,
          "transcript": "ENST00000920691.1",
          "protein_id": "ENSP00000590750.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920691.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-583A>G",
          "hgvs_p": null,
          "transcript": "ENST00000920692.1",
          "protein_id": "ENSP00000590751.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920692.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-1890A>G",
          "hgvs_p": null,
          "transcript": "ENST00000950264.1",
          "protein_id": "ENSP00000620323.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000950264.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-260-1410A>G",
          "hgvs_p": null,
          "transcript": "NM_001100118.2",
          "protein_id": "NP_001093588.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001100118.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
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          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-354-9A>G",
          "hgvs_p": null,
          "transcript": "NM_001100119.2",
          "protein_id": "NP_001093589.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
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          "cds_length": 1041,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001100119.2"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "intron_rank": 1,
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          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-327-36A>G",
          "hgvs_p": null,
          "transcript": "NM_001371229.1",
          "protein_id": "NP_001358158.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 346,
          "cds_start": null,
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          "cds_length": 1041,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001371229.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-411-46A>G",
          "hgvs_p": null,
          "transcript": "NM_001371231.1",
          "protein_id": "NP_001358160.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": null,
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          "cds_length": 1041,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001371231.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "consequences": [
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          ],
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          "intron_rank": 1,
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          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-289-9A>G",
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          "transcript": "NM_001371232.1",
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          "cds_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001371232.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-289-9A>G",
          "hgvs_p": null,
          "transcript": "ENST00000554913.5",
          "protein_id": "ENSP00000451362.1",
          "transcript_support_level": 2,
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          "aa_length": 346,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000554913.5"
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-327-36A>G",
          "hgvs_p": null,
          "transcript": "ENST00000881941.1",
          "protein_id": "ENSP00000552000.1",
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          "cds_start": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
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          "consequences": [
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          ],
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          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-320-43A>G",
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          "transcript": "ENST00000881942.1",
          "protein_id": "ENSP00000552001.1",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
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            "intron_variant"
          ],
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          "exon_count": 11,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-327-36A>G",
          "hgvs_p": null,
          "transcript": "ENST00000881943.1",
          "protein_id": "ENSP00000552002.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000881943.1"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "XRCC3",
          "gene_hgnc_id": 12830,
          "hgvs_c": "c.-254-1410A>G",
          "hgvs_p": null,
          "transcript": "ENST00000881944.1",
          "protein_id": "ENSP00000552003.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000881944.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  "message": null
}