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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-59988697-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=59988697&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 59988697,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000570145.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "NM_001395648.1",
"protein_id": "NP_001382577.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1494,
"cds_start": -4,
"cds_end": null,
"cds_length": 4485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8103,
"mane_select": "ENST00000570145.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "ENST00000570145.2",
"protein_id": "ENSP00000457773.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 1494,
"cds_start": -4,
"cds_end": null,
"cds_length": 4485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8103,
"mane_select": "NM_001395648.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "NM_001355272.3",
"protein_id": "NP_001342201.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1494,
"cds_start": -4,
"cds_end": null,
"cds_length": 4485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8144,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "ENST00000647410.1",
"protein_id": "ENSP00000493790.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1494,
"cds_start": -4,
"cds_end": null,
"cds_length": 4485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "ENST00000445360.5",
"protein_id": "ENSP00000454748.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1453,
"cds_start": -4,
"cds_end": null,
"cds_length": 4362,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4717,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "n.2211+3473C>G",
"hgvs_p": null,
"transcript": "ENST00000254271.8",
"protein_id": "ENSP00000454848.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4915,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.220-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000554123.2",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 582,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.154-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000555432.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 491,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.400-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000823211.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 810,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.228-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000823212.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 384,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.407-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000823213.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
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"cdna_start": null,
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"cdna_length": 796,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
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"hgvs_c": "n.216-15184G>C",
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"transcript": "ENST00000823214.1",
"protein_id": null,
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"aa_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.283-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000823215.1",
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"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 3,
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"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.335-15184G>C",
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"transcript": "ENST00000823216.1",
"protein_id": null,
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},
{
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"strand": false,
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],
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"intron_rank": 3,
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"gene_symbol": "PCNX4-DT",
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"hgvs_c": "n.302-15184G>C",
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"transcript": "ENST00000823218.1",
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.204-15184G>C",
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"transcript": "ENST00000823219.1",
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},
{
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],
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"gene_symbol": "PCNX4-DT",
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"hgvs_c": "n.317-19295G>C",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.236-19295G>C",
"hgvs_p": null,
"transcript": "ENST00000823221.1",
"protein_id": null,
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},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "PCNX4-DT",
"gene_hgnc_id": 55447,
"hgvs_c": "n.92-15184G>C",
"hgvs_p": null,
"transcript": "ENST00000823229.1",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": true,
"consequences": [
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],
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"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "n.2415+3473C>G",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 17,
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"gene_symbol": "LRRC9",
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"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "XM_024449563.2",
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},
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"strand": true,
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],
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"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
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"transcript": "XM_024449564.2",
"protein_id": "XP_024305332.1",
"transcript_support_level": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "LRRC9",
"gene_hgnc_id": 19848,
"hgvs_c": "c.2211+3473C>G",
"hgvs_p": null,
"transcript": "XM_024449565.2",
"protein_id": "XP_024305333.1",
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"aa_start": null,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
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