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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-88620934-TAAAA-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=88620934&ref=TAAAA&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 88620934,
"ref": "TAAAA",
"alt": "T",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000251038.10",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_024824.5",
"protein_id": "NP_079100.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 736,
"cds_start": -4,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18153,
"mane_select": "ENST00000251038.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "ENST00000251038.10",
"protein_id": "ENSP00000251038.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 736,
"cds_start": -4,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18153,
"mane_select": "NM_024824.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "EML5",
"gene_hgnc_id": 18197,
"hgvs_c": "c.5203-12_5203-9delTTTT",
"hgvs_p": null,
"transcript": "NM_183387.3",
"protein_id": "NP_899243.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1977,
"cds_start": -4,
"cds_end": null,
"cds_length": 5934,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9771,
"mane_select": "ENST00000554922.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "EML5",
"gene_hgnc_id": 18197,
"hgvs_c": "c.5203-12_5203-9delTTTT",
"hgvs_p": null,
"transcript": "ENST00000554922.6",
"protein_id": "ENSP00000451998.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1977,
"cds_start": -4,
"cds_end": null,
"cds_length": 5934,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9771,
"mane_select": "NM_183387.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "n.11345_11348delAAAA",
"hgvs_p": null,
"transcript": "NR_136936.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 17993,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001160103.2",
"protein_id": "NP_001153575.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 735,
"cds_start": -4,
"cds_end": null,
"cds_length": 2208,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18150,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326310.2",
"protein_id": "NP_001313239.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 731,
"cds_start": -4,
"cds_end": null,
"cds_length": 2196,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18138,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001160104.2",
"protein_id": "NP_001153576.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 730,
"cds_start": -4,
"cds_end": null,
"cds_length": 2193,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18135,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326307.2",
"protein_id": "NP_001313236.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 711,
"cds_start": -4,
"cds_end": null,
"cds_length": 2136,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18078,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326296.2",
"protein_id": "NP_001313225.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 710,
"cds_start": -4,
"cds_end": null,
"cds_length": 2133,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18075,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326312.2",
"protein_id": "NP_001313241.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 706,
"cds_start": -4,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 18063,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326299.2",
"protein_id": "NP_001313228.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 705,
"cds_start": -4,
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"cds_length": 2118,
"cdna_start": null,
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"cdna_length": 18060,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326297.2",
"protein_id": "NP_001313226.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 702,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 18334,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326315.2",
"protein_id": "NP_001313244.1",
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326316.2",
"protein_id": "NP_001313245.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 701,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326301.2",
"protein_id": "NP_001313230.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326295.2",
"protein_id": "NP_001313224.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 605,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326300.2",
"protein_id": "NP_001313229.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 581,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326298.2",
"protein_id": "NP_001313227.1",
"transcript_support_level": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326302.2",
"protein_id": "NP_001313231.1",
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"aa_start": null,
"aa_end": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_207660.4",
"protein_id": "NP_997543.1",
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"aa_start": null,
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"aa_length": 579,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 17682,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_207661.3",
"protein_id": "NP_997544.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 571,
"cds_start": -4,
"cds_end": null,
"cds_length": 1716,
"cdna_start": null,
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"cdna_length": 17736,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZC3H14",
"gene_hgnc_id": 20509,
"hgvs_c": "c.*9197_*9200delAAAA",
"hgvs_p": null,
"transcript": "NM_001326305.2",
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}