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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-42945451-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=42945451&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 42945451,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_174916.3",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.5128T>G",
"hgvs_p": "p.Leu1710Val",
"transcript": "NM_174916.3",
"protein_id": "NP_777576.1",
"transcript_support_level": null,
"aa_start": 1710,
"aa_end": null,
"aa_length": 1749,
"cds_start": 5128,
"cds_end": null,
"cds_length": 5250,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000290650.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_174916.3"
},
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.5128T>G",
"hgvs_p": "p.Leu1710Val",
"transcript": "ENST00000290650.9",
"protein_id": "ENSP00000290650.4",
"transcript_support_level": 1,
"aa_start": 1710,
"aa_end": null,
"aa_length": 1749,
"cds_start": 5128,
"cds_end": null,
"cds_length": 5250,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_174916.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000290650.9"
},
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 48,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.5200T>G",
"hgvs_p": "p.Leu1734Val",
"transcript": "ENST00000914218.1",
"protein_id": "ENSP00000584277.1",
"transcript_support_level": null,
"aa_start": 1734,
"aa_end": null,
"aa_length": 1773,
"cds_start": 5200,
"cds_end": null,
"cds_length": 5322,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914218.1"
},
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.5104T>G",
"hgvs_p": "p.Leu1702Val",
"transcript": "ENST00000914217.1",
"protein_id": "ENSP00000584276.1",
"transcript_support_level": null,
"aa_start": 1702,
"aa_end": null,
"aa_length": 1741,
"cds_start": 5104,
"cds_end": null,
"cds_length": 5226,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914217.1"
},
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.4999T>G",
"hgvs_p": "p.Leu1667Val",
"transcript": "ENST00000914215.1",
"protein_id": "ENSP00000584274.1",
"transcript_support_level": null,
"aa_start": 1667,
"aa_end": null,
"aa_length": 1706,
"cds_start": 4999,
"cds_end": null,
"cds_length": 5121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914215.1"
},
{
"aa_ref": "L",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 44,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "c.4897T>G",
"hgvs_p": "p.Leu1633Val",
"transcript": "ENST00000914216.1",
"protein_id": "ENSP00000584275.1",
"transcript_support_level": null,
"aa_start": 1633,
"aa_end": null,
"aa_length": 1672,
"cds_start": 4897,
"cds_end": null,
"cds_length": 5019,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914216.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"hgvs_c": "n.333T>G",
"hgvs_p": null,
"transcript": "ENST00000562173.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000562173.1"
}
],
"gene_symbol": "UBR1",
"gene_hgnc_id": 16808,
"dbsnp": "rs2031716308",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.8671348094940186,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.519,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.4499,
"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": 0.25,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 3.495,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PM2",
"PP3_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_174916.3",
"gene_symbol": "UBR1",
"hgnc_id": 16808,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.5128T>G",
"hgvs_p": "p.Leu1710Val"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}