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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-43536810-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=43536810&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 43536810,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000420765.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3671-1334G>A",
"hgvs_p": null,
"transcript": "NM_001394395.1",
"protein_id": "NP_001381324.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1490,
"cds_start": -4,
"cds_end": null,
"cds_length": 4473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5831,
"mane_select": "ENST00000420765.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3671-1334G>A",
"hgvs_p": null,
"transcript": "ENST00000420765.6",
"protein_id": "ENSP00000400887.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1490,
"cds_start": -4,
"cds_end": null,
"cds_length": 4473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5831,
"mane_select": "NM_001394395.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 29,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3500-1334G>A",
"hgvs_p": null,
"transcript": "ENST00000396923.7",
"protein_id": "ENSP00000380129.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1433,
"cds_start": -4,
"cds_end": null,
"cds_length": 4302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5636,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 28,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3425-1334G>A",
"hgvs_p": null,
"transcript": "ENST00000334933.8",
"protein_id": "ENSP00000334779.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1408,
"cds_start": -4,
"cds_end": null,
"cds_length": 4227,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5586,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3575-1334G>A",
"hgvs_p": null,
"transcript": "NM_001393969.1",
"protein_id": "NP_001380898.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1458,
"cds_start": -4,
"cds_end": null,
"cds_length": 4377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5735,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3575-1334G>A",
"hgvs_p": null,
"transcript": "NM_001393970.1",
"protein_id": "NP_001380899.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1458,
"cds_start": -4,
"cds_end": null,
"cds_length": 4377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5824,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3575-1334G>A",
"hgvs_p": null,
"transcript": "ENST00000707073.1",
"protein_id": "ENSP00000516724.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1458,
"cds_start": -4,
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"cdna_start": null,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3551-1334G>A",
"hgvs_p": null,
"transcript": "NM_001393971.1",
"protein_id": "NP_001380900.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1450,
"cds_start": -4,
"cds_end": null,
"cds_length": 4353,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5711,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3500-1334G>A",
"hgvs_p": null,
"transcript": "NM_001130858.4",
"protein_id": "NP_001124330.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1433,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 30,
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"gene_symbol": "PPIP5K1",
"gene_hgnc_id": 29023,
"hgvs_c": "c.3488-1334G>A",
"hgvs_p": null,
"transcript": "NM_001354382.3",
"protein_id": "NP_001341311.1",
"transcript_support_level": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 30,
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"gene_symbol": "PPIP5K1",
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"hgvs_c": "c.3488-1334G>A",
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"transcript": "NM_001354383.2",
"protein_id": "NP_001341312.1",
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},
{
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],
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},
{
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],
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"hgvs_c": "c.3488-1334G>A",
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},
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],
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"gene_symbol": "PPIP5K1",
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},
{
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],
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"gene_symbol": "PPIP5K1",
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"hgvs_c": "c.3488-1334G>A",
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"transcript": "ENST00000381885.5",
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},
{
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],
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"gene_symbol": "PPIP5K1",
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"gene_symbol": "PPIP5K1",
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"hgvs_c": "c.3464-1334G>A",
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"transcript": "NM_001354389.2",
"protein_id": "NP_001341318.1",
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],
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"gene_symbol": "PPIP5K1",
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},
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],
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"gene_symbol": "PPIP5K1",
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"hgvs_c": "c.3425-1334G>A",
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"transcript": "NM_001354391.2",
"protein_id": "NP_001341320.1",
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},
{
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],
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"gene_symbol": "PPIP5K1",
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"hgvs_c": "c.3425-1334G>A",
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