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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-58925895-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=58925895&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 58925895,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000380516.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "NM_024755.4",
"protein_id": "NP_079031.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1034,
"cds_start": -4,
"cds_end": null,
"cds_length": 3105,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4168,
"mane_select": "ENST00000380516.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000380516.7",
"protein_id": "ENSP00000369887.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1034,
"cds_start": -4,
"cds_end": null,
"cds_length": 3105,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4168,
"mane_select": "NM_024755.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "NM_001013843.3",
"protein_id": "NP_001013865.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1016,
"cds_start": -4,
"cds_end": null,
"cds_length": 3051,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4114,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000249736.11",
"protein_id": "ENSP00000249736.7",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 452,
"cds_start": -4,
"cds_end": null,
"cds_length": 1359,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1373,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000559880.5",
"protein_id": "ENSP00000453065.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 688,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 717,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000558486.5",
"protein_id": "ENSP00000453179.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 191,
"cds_start": -4,
"cds_end": null,
"cds_length": 576,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 585,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000560682.5",
"protein_id": "ENSP00000453987.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 160,
"cds_start": -4,
"cds_end": null,
"cds_length": 484,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 495,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "RNF111",
"gene_hgnc_id": 17384,
"hgvs_c": "c.-20+60593C>G",
"hgvs_p": null,
"transcript": "ENST00000559757.1",
"protein_id": "ENSP00000452919.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 130,
"cds_start": -4,
"cds_end": null,
"cds_length": 394,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 541,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.162+7509G>C",
"hgvs_p": null,
"transcript": "ENST00000628684.2",
"protein_id": "ENSP00000485870.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 62,
"cds_start": -4,
"cds_end": null,
"cds_length": 189,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1040,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.285+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000480144.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2277,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.259+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000484498.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 685,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.250+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000492526.5",
"protein_id": "ENSP00000453711.1",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.162+7509G>C",
"hgvs_p": null,
"transcript": "ENST00000557924.5",
"protein_id": "ENSP00000454000.1",
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.243+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000557950.5",
"protein_id": null,
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"aa_start": null,
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},
{
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"strand": false,
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],
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"gene_symbol": "SLTM",
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"hgvs_c": "n.133+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000558756.5",
"protein_id": "ENSP00000452945.1",
"transcript_support_level": 5,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.251-4311G>C",
"hgvs_p": null,
"transcript": "ENST00000559261.1",
"protein_id": "ENSP00000453775.1",
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"aa_start": null,
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},
{
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],
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"intron_rank": 1,
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"gene_symbol": "SLTM",
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"hgvs_c": "n.162+7509G>C",
"hgvs_p": null,
"transcript": "ENST00000559305.5",
"protein_id": "ENSP00000453371.1",
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"mane_select": null,
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"biotype": null,
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},
{
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"canonical": false,
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.266+6461G>C",
"hgvs_p": null,
"transcript": "ENST00000560012.5",
"protein_id": null,
"transcript_support_level": 4,
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"mane_select": null,
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"biotype": null,
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},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.364+6461G>C",
"hgvs_p": null,
"transcript": "NR_135042.2",
"protein_id": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "SLTM",
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"hgvs_c": "n.276+7509G>C",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "SLTM",
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"hgvs_c": "c.250+6461G>C",
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"transcript": "XM_011522022.2",
"protein_id": "XP_011520324.2",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "XM_011522023.2",
"protein_id": "XP_011520325.2",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.250+6461G>C",
"hgvs_p": null,
"transcript": "XM_011522024.2",
"protein_id": "XP_011520326.2",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 991,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 4039,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
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