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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-63071092-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=63071092&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 63071092,
"ref": "A",
"alt": "G",
"effect": "missense_variant,splice_region_variant",
"transcript": "NM_001365778.1",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "ENST00000267996.11",
"protein_id": "ENSP00000267996.7",
"transcript_support_level": 1,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000267996.11"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "ENST00000358278.7",
"protein_id": "ENSP00000351022.3",
"transcript_support_level": 1,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000358278.7"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.667A>G",
"hgvs_p": "p.Lys223Glu",
"transcript": "ENST00000404484.9",
"protein_id": "ENSP00000384315.4",
"transcript_support_level": 1,
"aa_start": 223,
"aa_end": null,
"aa_length": 248,
"cds_start": 667,
"cds_end": null,
"cds_length": 747,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000404484.9"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.901A>G",
"hgvs_p": "p.Lys301Glu",
"transcript": "NM_001365778.1",
"protein_id": "NP_001352707.1",
"transcript_support_level": null,
"aa_start": 301,
"aa_end": null,
"aa_length": 326,
"cds_start": 901,
"cds_end": null,
"cds_length": 981,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001365778.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.901A>G",
"hgvs_p": "p.Lys301Glu",
"transcript": "ENST00000357980.9",
"protein_id": "ENSP00000350667.4",
"transcript_support_level": 2,
"aa_start": 301,
"aa_end": null,
"aa_length": 326,
"cds_start": 901,
"cds_end": null,
"cds_length": 981,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000357980.9"
},
{
"aa_ref": "E",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.854A>G",
"hgvs_p": "p.Glu285Gly",
"transcript": "NM_001407326.1",
"protein_id": "NP_001394255.1",
"transcript_support_level": null,
"aa_start": 285,
"aa_end": null,
"aa_length": 294,
"cds_start": 854,
"cds_end": null,
"cds_length": 885,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001407326.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "NM_001018004.2",
"protein_id": "NP_001018004.1",
"transcript_support_level": null,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018004.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "NM_001018006.2",
"protein_id": "NP_001018006.1",
"transcript_support_level": null,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018006.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "NM_001018007.2",
"protein_id": "NP_001018007.1",
"transcript_support_level": null,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018007.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "NM_001018020.2",
"protein_id": "NP_001018020.1",
"transcript_support_level": null,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018020.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "ENST00000559397.6",
"protein_id": "ENSP00000452879.1",
"transcript_support_level": 2,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559397.6"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.775A>G",
"hgvs_p": "p.Lys259Glu",
"transcript": "ENST00000559556.5",
"protein_id": "ENSP00000453941.1",
"transcript_support_level": 2,
"aa_start": 259,
"aa_end": null,
"aa_length": 284,
"cds_start": 775,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559556.5"
},
{
"aa_ref": "E",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.734A>G",
"hgvs_p": "p.Glu245Gly",
"transcript": "ENST00000714014.1",
"protein_id": "ENSP00000519304.1",
"transcript_support_level": null,
"aa_start": 245,
"aa_end": null,
"aa_length": 254,
"cds_start": 734,
"cds_end": null,
"cds_length": 765,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000714014.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.667A>G",
"hgvs_p": "p.Lys223Glu",
"transcript": "NM_001301289.2",
"protein_id": "NP_001288218.1",
"transcript_support_level": null,
"aa_start": 223,
"aa_end": null,
"aa_length": 248,
"cds_start": 667,
"cds_end": null,
"cds_length": 747,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001301289.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.667A>G",
"hgvs_p": "p.Lys223Glu",
"transcript": "NM_001330344.2",
"protein_id": "NP_001317273.1",
"transcript_support_level": null,
"aa_start": 223,
"aa_end": null,
"aa_length": 248,
"cds_start": 667,
"cds_end": null,
"cds_length": 747,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001330344.2"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.397A>G",
"hgvs_p": "p.Lys133Glu",
"transcript": "ENST00000560615.6",
"protein_id": "ENSP00000453050.2",
"transcript_support_level": 3,
"aa_start": 133,
"aa_end": null,
"aa_length": 158,
"cds_start": 397,
"cds_end": null,
"cds_length": 477,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000560615.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001365776.1",
"protein_id": "NP_001352705.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 281,
"cds_start": null,
"cds_end": null,
"cds_length": 846,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001365776.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001407336.1",
"protein_id": "NP_001394265.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 281,
"cds_start": null,
"cds_end": null,
"cds_length": 846,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001407336.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001407337.1",
"protein_id": "NP_001394266.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 281,
"cds_start": null,
"cds_end": null,
"cds_length": 846,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001407337.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001407338.1",
"protein_id": "NP_001394267.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 281,
"cds_start": null,
"cds_end": null,
"cds_length": 846,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001407338.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001018008.2",
"protein_id": "NP_001018008.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 245,
"cds_start": null,
"cds_end": null,
"cds_length": 738,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018008.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "NM_001330351.2",
"protein_id": "NP_001317280.1",
"transcript_support_level": null,
"aa_start": null,
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"biotype": "nonsense_mediated_decay",
"feature": "ENST00000558347.5"
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{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
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],
"exon_rank": 7,
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"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
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"hgvs_c": "n.*383A>G",
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"transcript": "ENST00000558544.5",
"protein_id": "ENSP00000453817.1",
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"aa_end": null,
"aa_length": null,
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"feature": "ENST00000558544.5"
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{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
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"exon_rank": 10,
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"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
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"hgvs_c": "n.*1414A>G",
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"transcript": "ENST00000559831.6",
"protein_id": "ENSP00000452977.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000559831.6"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "n.*1409A>G",
"hgvs_p": null,
"transcript": "ENST00000705544.1",
"protein_id": "ENSP00000516139.1",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000705544.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000259627",
"gene_hgnc_id": null,
"hgvs_c": "n.254+566T>C",
"hgvs_p": null,
"transcript": "ENST00000558905.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000558905.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000304541",
"gene_hgnc_id": null,
"hgvs_c": "n.560-2110T>C",
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"transcript": "ENST00000804416.1",
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"transcript_support_level": null,
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"aa_end": null,
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"cds_end": null,
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"cdna_start": null,
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"cdna_length": null,
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"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000804416.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"hgvs_c": "c.*1149A>G",
"hgvs_p": null,
"transcript": "ENST00000651704.1",
"protein_id": "ENSP00000498562.1",
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"aa_start": null,
"aa_end": null,
"aa_length": 155,
"cds_start": null,
"cds_end": null,
"cds_length": 468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000651704.1"
}
],
"gene_symbol": "TPM1",
"gene_hgnc_id": 12010,
"dbsnp": "rs144045691",
"frequency_reference_population": 0.00050057867,
"hom_count_reference_population": 0,
"allele_count_reference_population": 808,
"gnomad_exomes_af": 0.000500079,
"gnomad_genomes_af": 0.000505375,
"gnomad_exomes_ac": 731,
"gnomad_genomes_ac": 77,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.008403360843658447,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": 0.294,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.1842,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.13,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 9.11,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -20,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS1,BS2",
"acmg_by_gene": [
{
"score": -20,
"benign_score": 20,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_001365778.1",
"gene_symbol": "TPM1",
"hgnc_id": 12010,
"effects": [
"missense_variant",
"splice_region_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.901A>G",
"hgvs_p": "p.Lys301Glu"
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong"
],
"verdict": "Benign",
"transcript": "ENST00000558905.1",
"gene_symbol": "ENSG00000259627",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.254+566T>C",
"hgvs_p": null
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong"
],
"verdict": "Benign",
"transcript": "ENST00000804416.1",
"gene_symbol": "ENSG00000304541",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.560-2110T>C",
"hgvs_p": null
}
],
"clinvar_disease": "Cardiomyopathy,Primary familial hypertrophic cardiomyopathy,TPM1-related disorder,not provided,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:3 B:1",
"phenotype_combined": "Cardiomyopathy|not specified|Primary familial hypertrophic cardiomyopathy|TPM1-related disorder|not provided",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}