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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-67181365-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=67181365&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 67181365,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000327367.9",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.783C>T",
"hgvs_p": "p.Thr261Thr",
"transcript": "NM_005902.4",
"protein_id": "NP_005893.1",
"transcript_support_level": null,
"aa_start": 261,
"aa_end": null,
"aa_length": 425,
"cds_start": 783,
"cds_end": null,
"cds_length": 1278,
"cdna_start": 1336,
"cdna_end": null,
"cdna_length": 6464,
"mane_select": "ENST00000327367.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.783C>T",
"hgvs_p": "p.Thr261Thr",
"transcript": "ENST00000327367.9",
"protein_id": "ENSP00000332973.4",
"transcript_support_level": 1,
"aa_start": 261,
"aa_end": null,
"aa_length": 425,
"cds_start": 783,
"cds_end": null,
"cds_length": 1278,
"cdna_start": 1336,
"cdna_end": null,
"cdna_length": 6464,
"mane_select": "NM_005902.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.651C>T",
"hgvs_p": "p.Thr217Thr",
"transcript": "ENST00000439724.7",
"protein_id": "ENSP00000401133.3",
"transcript_support_level": 1,
"aa_start": 217,
"aa_end": null,
"aa_length": 381,
"cds_start": 651,
"cds_end": null,
"cds_length": 1146,
"cdna_start": 677,
"cdna_end": null,
"cdna_length": 1530,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000540846.6",
"protein_id": "ENSP00000437757.2",
"transcript_support_level": 1,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
"cds_end": null,
"cds_length": 963,
"cdna_start": 846,
"cdna_end": null,
"cdna_length": 1567,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.198C>T",
"hgvs_p": "p.Thr66Thr",
"transcript": "ENST00000537194.6",
"protein_id": "ENSP00000445348.2",
"transcript_support_level": 1,
"aa_start": 66,
"aa_end": null,
"aa_length": 230,
"cds_start": 198,
"cds_end": null,
"cds_length": 693,
"cdna_start": 426,
"cdna_end": null,
"cdna_length": 1147,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.783C>T",
"hgvs_p": "p.Thr261Thr",
"transcript": "NM_001407011.1",
"protein_id": "NP_001393940.1",
"transcript_support_level": null,
"aa_start": 261,
"aa_end": null,
"aa_length": 462,
"cds_start": 783,
"cds_end": null,
"cds_length": 1389,
"cdna_start": 1336,
"cdna_end": null,
"cdna_length": 6575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.783C>T",
"hgvs_p": "p.Thr261Thr",
"transcript": "ENST00000560424.2",
"protein_id": "ENSP00000455540.2",
"transcript_support_level": 3,
"aa_start": 261,
"aa_end": null,
"aa_length": 462,
"cds_start": 783,
"cds_end": null,
"cds_length": 1389,
"cdna_start": 1335,
"cdna_end": null,
"cdna_length": 2915,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.816C>T",
"hgvs_p": "p.Thr272Thr",
"transcript": "ENST00000714110.1",
"protein_id": "ENSP00000519402.1",
"transcript_support_level": null,
"aa_start": 272,
"aa_end": null,
"aa_length": 436,
"cds_start": 816,
"cds_end": null,
"cds_length": 1311,
"cdna_start": 816,
"cdna_end": null,
"cdna_length": 2726,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.651C>T",
"hgvs_p": "p.Thr217Thr",
"transcript": "NM_001145103.2",
"protein_id": "NP_001138575.1",
"transcript_support_level": null,
"aa_start": 217,
"aa_end": null,
"aa_length": 381,
"cds_start": 651,
"cds_end": null,
"cds_length": 1146,
"cdna_start": 657,
"cdna_end": null,
"cdna_length": 5785,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.651C>T",
"hgvs_p": "p.Thr217Thr",
"transcript": "NM_001407012.1",
"protein_id": "NP_001393941.1",
"transcript_support_level": null,
"aa_start": 217,
"aa_end": null,
"aa_length": 381,
"cds_start": 651,
"cds_end": null,
"cds_length": 1146,
"cdna_start": 1204,
"cdna_end": null,
"cdna_length": 6332,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.651C>T",
"hgvs_p": "p.Thr217Thr",
"transcript": "ENST00000714109.1",
"protein_id": "ENSP00000519401.1",
"transcript_support_level": null,
"aa_start": 217,
"aa_end": null,
"aa_length": 381,
"cds_start": 651,
"cds_end": null,
"cds_length": 1146,
"cdna_start": 651,
"cdna_end": null,
"cdna_length": 2323,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.783C>T",
"hgvs_p": "p.Thr261Thr",
"transcript": "NM_001407013.1",
"protein_id": "NP_001393942.1",
"transcript_support_level": null,
"aa_start": 261,
"aa_end": null,
"aa_length": 379,
"cds_start": 783,
"cds_end": null,
"cds_length": 1140,
"cdna_start": 1336,
"cdna_end": null,
"cdna_length": 6326,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.636C>T",
"hgvs_p": "p.Thr212Thr",
"transcript": "NM_001407014.1",
"protein_id": "NP_001393943.1",
"transcript_support_level": null,
"aa_start": 212,
"aa_end": null,
"aa_length": 376,
"cds_start": 636,
"cds_end": null,
"cds_length": 1131,
"cdna_start": 923,
"cdna_end": null,
"cdna_length": 6051,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "NM_001145102.2",
"protein_id": "NP_001138574.1",
"transcript_support_level": null,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
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"cdna_start": 820,
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"cdna_length": 5948,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "NM_001407016.1",
"protein_id": "NP_001393945.1",
"transcript_support_level": null,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
"cds_end": null,
"cds_length": 963,
"cdna_start": 1079,
"cdna_end": null,
"cdna_length": 6207,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000558739.2",
"protein_id": "ENSP00000453684.2",
"transcript_support_level": 3,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
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"cdna_start": 865,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000559460.6",
"protein_id": "ENSP00000453082.2",
"transcript_support_level": 4,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
"cds_end": null,
"cds_length": 963,
"cdna_start": 759,
"cdna_end": null,
"cdna_length": 5887,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000679624.1",
"protein_id": "ENSP00000505445.1",
"transcript_support_level": null,
"aa_start": 156,
"aa_end": null,
"aa_length": 320,
"cds_start": 468,
"cds_end": null,
"cds_length": 963,
"cdna_start": 706,
"cdna_end": null,
"cdna_length": 5838,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000681239.1",
"protein_id": "ENSP00000505641.1",
"transcript_support_level": null,
"aa_start": 156,
"aa_end": null,
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"cds_start": 468,
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"cdna_start": 734,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.336C>T",
"hgvs_p": "p.Thr112Thr",
"transcript": "NM_001407015.1",
"protein_id": "NP_001393944.1",
"transcript_support_level": null,
"aa_start": 112,
"aa_end": null,
"aa_length": 276,
"cds_start": 336,
"cds_end": null,
"cds_length": 831,
"cdna_start": 688,
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"cdna_length": 5816,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.468C>T",
"hgvs_p": "p.Thr156Thr",
"transcript": "ENST00000558894.6",
"protein_id": "ENSP00000458060.2",
"transcript_support_level": 5,
"aa_start": 156,
"aa_end": null,
"aa_length": 274,
"cds_start": 468,
"cds_end": null,
"cds_length": 825,
"cdna_start": 626,
"cdna_end": null,
"cdna_length": 1341,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.198C>T",
"hgvs_p": "p.Thr66Thr",
"transcript": "NM_001145104.2",
"protein_id": "NP_001138576.1",
"transcript_support_level": null,
"aa_start": 66,
"aa_end": null,
"aa_length": 230,
"cds_start": 198,
"cds_end": null,
"cds_length": 693,
"cdna_start": 284,
"cdna_end": null,
"cdna_length": 5412,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SMAD3",
"gene_hgnc_id": 6769,
"hgvs_c": "c.198C>T",
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"transcript": "NM_001407017.1",
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],
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"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
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"splice_prediction_selected": "Benign",
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"alphamissense_score": null,
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"bayesdelnoaf_score": -0.35,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -2.556,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"acmg_score": -19,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BP7,BS1,BS2",
"acmg_by_gene": [
{
"score": -19,
"benign_score": 19,
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"criteria": [
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"BP7",
"BS1",
"BS2"
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"verdict": "Benign",
"transcript": "ENST00000327367.9",
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],
"inheritance_mode": "AD",
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}
],
"clinvar_disease": "Aneurysm-osteoarthritis syndrome,Familial thoracic aortic aneurysm and aortic dissection,SMAD3-related disorder,not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:5",
"phenotype_combined": "Familial thoracic aortic aneurysm and aortic dissection|not provided|Aneurysm-osteoarthritis syndrome|SMAD3-related disorder",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}