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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-58001525-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=58001525&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 58001525,
"ref": "C",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000219281.8",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "NM_024598.4",
"protein_id": "NP_078874.2",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 265,
"cds_start": 42,
"cds_end": null,
"cds_length": 798,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 2248,
"mane_select": "ENST00000219281.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000219281.8",
"protein_id": "ENSP00000219281.3",
"transcript_support_level": 1,
"aa_start": 14,
"aa_end": null,
"aa_length": 265,
"cds_start": 42,
"cds_end": null,
"cds_length": 798,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 2248,
"mane_select": "NM_024598.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "NM_001195302.2",
"protein_id": "NP_001182231.1",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 247,
"cds_start": 42,
"cds_end": null,
"cds_length": 744,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 2194,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000539737.6",
"protein_id": "ENSP00000446143.2",
"transcript_support_level": 2,
"aa_start": 14,
"aa_end": null,
"aa_length": 247,
"cds_start": 42,
"cds_end": null,
"cds_length": 744,
"cdna_start": 121,
"cdna_end": null,
"cdna_length": 1212,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000698445.1",
"protein_id": "ENSP00000513727.1",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 228,
"cds_start": 42,
"cds_end": null,
"cds_length": 687,
"cdna_start": 466,
"cdna_end": null,
"cdna_length": 2489,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "NM_001204911.2",
"protein_id": "NP_001191840.1",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 186,
"cds_start": 42,
"cds_end": null,
"cds_length": 561,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 3067,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000423271.8",
"protein_id": "ENSP00000409792.3",
"transcript_support_level": 2,
"aa_start": 14,
"aa_end": null,
"aa_length": 186,
"cds_start": 42,
"cds_end": null,
"cds_length": 561,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 3051,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000698510.1",
"protein_id": "ENSP00000513760.1",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 170,
"cds_start": 42,
"cds_end": null,
"cds_length": 513,
"cdna_start": 123,
"cdna_end": null,
"cdna_length": 1402,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "NM_001330569.2",
"protein_id": "NP_001317498.1",
"transcript_support_level": null,
"aa_start": 14,
"aa_end": null,
"aa_length": 163,
"cds_start": 42,
"cds_end": null,
"cds_length": 492,
"cdna_start": 119,
"cdna_end": null,
"cdna_length": 1764,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser",
"transcript": "ENST00000563149.2",
"protein_id": "ENSP00000454692.1",
"transcript_support_level": 2,
"aa_start": 14,
"aa_end": null,
"aa_length": 163,
"cds_start": 42,
"cds_end": null,
"cds_length": 492,
"cdna_start": 106,
"cdna_end": null,
"cdna_length": 2254,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000562534.5",
"protein_id": "ENSP00000513731.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 562,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.102C>A",
"hgvs_p": null,
"transcript": "ENST00000563207.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 464,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000564387.5",
"protein_id": "ENSP00000457302.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 558,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000565662.6",
"protein_id": "ENSP00000513729.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2168,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.110C>A",
"hgvs_p": null,
"transcript": "ENST00000566292.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.107C>A",
"hgvs_p": null,
"transcript": "ENST00000568848.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 548,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000569252.5",
"protein_id": "ENSP00000513730.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 573,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000698446.1",
"protein_id": "ENSP00000513728.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2216,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "n.42C>A",
"hgvs_p": null,
"transcript": "ENST00000698447.1",
"protein_id": "ENSP00000513732.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2224,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.-5C>A",
"hgvs_p": null,
"transcript": "ENST00000561568.6",
"protein_id": "ENSP00000457322.2",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 252,
"cds_start": -4,
"cds_end": null,
"cds_length": 759,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2227,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.-55-954C>A",
"hgvs_p": null,
"transcript": "NM_001330568.2",
"protein_id": "NP_001317497.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 214,
"cds_start": -4,
"cds_end": null,
"cds_length": 645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2154,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.-55-954C>A",
"hgvs_p": null,
"transcript": "ENST00000561743.5",
"protein_id": "ENSP00000454928.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 214,
"cds_start": -4,
"cds_end": null,
"cds_length": 645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1135,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"hgvs_c": "c.-55-954C>A",
"hgvs_p": null,
"transcript": "ENST00000698444.1",
"protein_id": "ENSP00000513726.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 214,
"cds_start": -4,
"cds_end": null,
"cds_length": 645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2117,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "USB1",
"gene_hgnc_id": 25792,
"dbsnp": "rs3743559",
"frequency_reference_population": 0.07506423,
"hom_count_reference_population": 5089,
"allele_count_reference_population": 120727,
"gnomad_exomes_af": 0.0766625,
"gnomad_genomes_af": 0.0597753,
"gnomad_exomes_ac": 111628,
"gnomad_genomes_ac": 9099,
"gnomad_exomes_homalt": 4708,
"gnomad_genomes_homalt": 381,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.46000000834465027,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.46,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -4.8,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -19,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BP7,BA1",
"acmg_by_gene": [
{
"score": -19,
"benign_score": 19,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BP6_Very_Strong",
"BP7",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000219281.8",
"gene_symbol": "USB1",
"hgnc_id": 25792,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.42C>A",
"hgvs_p": "p.Ser14Ser"
}
],
"clinvar_disease": "Poikiloderma with neutropenia,not provided,not specified",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:5",
"phenotype_combined": "not specified|not provided|Poikiloderma with neutropenia",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}