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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-69692513-TCAA-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=69692513&ref=TCAA&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 69692513,
"ref": "TCAA",
"alt": "T",
"effect": "disruptive_inframe_deletion",
"transcript": "ENST00000349945.7",
"consequences": [
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2691_2693delACA",
"hgvs_p": "p.Gln898del",
"transcript": "NM_138713.4",
"protein_id": "NP_619727.2",
"transcript_support_level": null,
"aa_start": 897,
"aa_end": null,
"aa_length": 1549,
"cds_start": 2691,
"cds_end": null,
"cds_length": 4650,
"cdna_start": 3027,
"cdna_end": null,
"cdna_length": 13289,
"mane_select": "ENST00000349945.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2691_2693delACA",
"hgvs_p": "p.Gln898del",
"transcript": "ENST00000349945.7",
"protein_id": "ENSP00000338806.3",
"transcript_support_level": 1,
"aa_start": 897,
"aa_end": null,
"aa_length": 1549,
"cds_start": 2691,
"cds_end": null,
"cds_length": 4650,
"cdna_start": 3027,
"cdna_end": null,
"cdna_length": 13289,
"mane_select": "NM_138713.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2688_2690delACA",
"hgvs_p": "p.Gln897del",
"transcript": "ENST00000567239.5",
"protein_id": "ENSP00000457593.1",
"transcript_support_level": 1,
"aa_start": 896,
"aa_end": null,
"aa_length": 1548,
"cds_start": 2688,
"cds_end": null,
"cds_length": 4647,
"cdna_start": 2928,
"cdna_end": null,
"cdna_length": 6376,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2637_2639delACA",
"hgvs_p": "p.Gln880del",
"transcript": "ENST00000354436.6",
"protein_id": "ENSP00000346420.2",
"transcript_support_level": 1,
"aa_start": 879,
"aa_end": null,
"aa_length": 1531,
"cds_start": 2637,
"cds_end": null,
"cds_length": 4596,
"cdna_start": 2955,
"cdna_end": null,
"cdna_length": 13229,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000393742.7",
"protein_id": "ENSP00000377343.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13067,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000426654.6",
"protein_id": "ENSP00000413126.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000566899.6",
"protein_id": "ENSP00000455628.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000393742.7",
"protein_id": "ENSP00000377343.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13067,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000426654.6",
"protein_id": "ENSP00000413126.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "n.*2453_*2455delACA",
"hgvs_p": null,
"transcript": "ENST00000566899.6",
"protein_id": "ENSP00000455628.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2688_2690delACA",
"hgvs_p": "p.Gln897del",
"transcript": "NM_001113178.3",
"protein_id": "NP_001106649.1",
"transcript_support_level": null,
"aa_start": 896,
"aa_end": null,
"aa_length": 1548,
"cds_start": 2688,
"cds_end": null,
"cds_length": 4647,
"cdna_start": 3024,
"cdna_end": null,
"cdna_length": 13286,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2637_2639delACA",
"hgvs_p": "p.Gln880del",
"transcript": "NM_006599.4",
"protein_id": "NP_006590.1",
"transcript_support_level": null,
"aa_start": 879,
"aa_end": null,
"aa_length": 1531,
"cds_start": 2637,
"cds_end": null,
"cds_length": 4596,
"cdna_start": 2973,
"cdna_end": null,
"cdna_length": 13235,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2409_2411delACA",
"hgvs_p": "p.Gln804del",
"transcript": "NM_138714.4",
"protein_id": "NP_619728.2",
"transcript_support_level": null,
"aa_start": 803,
"aa_end": null,
"aa_length": 1455,
"cds_start": 2409,
"cds_end": null,
"cds_length": 4368,
"cdna_start": 3089,
"cdna_end": null,
"cdna_length": 13351,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2409_2411delACA",
"hgvs_p": "p.Gln804del",
"transcript": "NM_173214.3",
"protein_id": "NP_775321.1",
"transcript_support_level": null,
"aa_start": 803,
"aa_end": null,
"aa_length": 1455,
"cds_start": 2409,
"cds_end": null,
"cds_length": 4368,
"cdna_start": 3035,
"cdna_end": null,
"cdna_length": 13297,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2409_2411delACA",
"hgvs_p": "p.Gln804del",
"transcript": "NM_173215.3",
"protein_id": "NP_775322.1",
"transcript_support_level": null,
"aa_start": 803,
"aa_end": null,
"aa_length": 1455,
"cds_start": 2409,
"cds_end": null,
"cds_length": 4368,
"cdna_start": 3035,
"cdna_end": null,
"cdna_length": 5326,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2016_2018delACA",
"hgvs_p": "p.Gln673del",
"transcript": "NM_001367709.1",
"protein_id": "NP_001354638.1",
"transcript_support_level": null,
"aa_start": 672,
"aa_end": null,
"aa_length": 1324,
"cds_start": 2016,
"cds_end": null,
"cds_length": 3975,
"cdna_start": 2551,
"cdna_end": null,
"cdna_length": 12813,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2634_2636delACA",
"hgvs_p": "p.Gln879del",
"transcript": "XM_011522817.4",
"protein_id": "XP_011521119.1",
"transcript_support_level": null,
"aa_start": 878,
"aa_end": null,
"aa_length": 1530,
"cds_start": 2634,
"cds_end": null,
"cds_length": 4593,
"cdna_start": 2970,
"cdna_end": null,
"cdna_length": 13232,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2505_2507delACA",
"hgvs_p": "p.Gln836del",
"transcript": "XM_047433510.1",
"protein_id": "XP_047289466.1",
"transcript_support_level": null,
"aa_start": 835,
"aa_end": null,
"aa_length": 1487,
"cds_start": 2505,
"cds_end": null,
"cds_length": 4464,
"cdna_start": 16134,
"cdna_end": null,
"cdna_length": 26396,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2505_2507delACA",
"hgvs_p": "p.Gln836del",
"transcript": "XM_047433511.1",
"protein_id": "XP_047289467.1",
"transcript_support_level": null,
"aa_start": 835,
"aa_end": null,
"aa_length": 1487,
"cds_start": 2505,
"cds_end": null,
"cds_length": 4464,
"cdna_start": 3042,
"cdna_end": null,
"cdna_length": 13304,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2502_2504delACA",
"hgvs_p": "p.Gln835del",
"transcript": "XM_047433513.1",
"protein_id": "XP_047289469.1",
"transcript_support_level": null,
"aa_start": 834,
"aa_end": null,
"aa_length": 1486,
"cds_start": 2502,
"cds_end": null,
"cds_length": 4461,
"cdna_start": 16131,
"cdna_end": null,
"cdna_length": 26393,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2409_2411delACA",
"hgvs_p": "p.Gln804del",
"transcript": "XM_047433512.1",
"protein_id": "XP_047289468.1",
"transcript_support_level": null,
"aa_start": 803,
"aa_end": null,
"aa_length": 1455,
"cds_start": 2409,
"cds_end": null,
"cds_length": 4368,
"cdna_start": 15685,
"cdna_end": null,
"cdna_length": 25947,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"disruptive_inframe_deletion"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NFAT5",
"gene_hgnc_id": 7774,
"hgvs_c": "c.2019_2021delACA",
"hgvs_p": "p.Gln674del",
"transcript": "XM_011522820.4",
"protein_id": "XP_011521122.1",
"transcript_support_level": null,
"aa_start": 673,
"aa_end": null,
"aa_length": 1325,
"cds_start": 2019,
"cds_end": null,
"cds_length": 3978,
"cdna_start": 2174,
"cdna_end": null,
"cdna_length": 12436,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "QQ",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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}
],
"gene_symbol": "NFAT5",
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"dbsnp": "rs542353221",
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"hom_count_reference_population": 5,
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"gnomad_exomes_ac": 2025,
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"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
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"alphamissense_score": null,
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"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 5.823,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
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"acmg_score": -7,
"acmg_classification": "Benign",
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"acmg_by_gene": [
{
"score": -7,
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"pathogenic_score": 0,
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"BP3",
"BP6_Moderate",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000349945.7",
"gene_symbol": "NFAT5",
"hgnc_id": 7774,
"effects": [
"disruptive_inframe_deletion"
],
"inheritance_mode": "AD",
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],
"clinvar_disease": "Immunodeficiency,NFAT5-related disorder",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "Immunodeficiency|NFAT5-related disorder",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}