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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-89291104-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=89291104&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 21,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BS1",
"BS2"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "ANKRD11",
"hgnc_id": 21316,
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -21,
"transcript": "NM_013275.6",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
"acmg_score": -21,
"allele_count_reference_population": 1324,
"alphamissense_prediction": null,
"alphamissense_score": 0.1762,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.55,
"chr": "16",
"clinvar_classification": "Benign/Likely benign",
"clinvar_disease": "Inborn genetic diseases,KBG syndrome,not provided",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2 B:4",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.550000011920929,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9301,
"cdna_start": 767,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_013275.6",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000301030.10",
"protein_coding": true,
"protein_id": "NP_037407.4",
"strand": false,
"transcript": "NM_013275.6",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 9301,
"cdna_start": 767,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000301030.10",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_013275.6",
"protein_coding": true,
"protein_id": "ENSP00000301030.4",
"strand": false,
"transcript": "ENST00000301030.10",
"transcript_support_level": 5
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9131,
"cdna_start": 597,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000378330.7",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000367581.2",
"strand": false,
"transcript": "ENST00000378330.7",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9372,
"cdna_start": 838,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001256182.2",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001243111.1",
"strand": false,
"transcript": "NM_001256182.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9298,
"cdna_start": 764,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001256183.2",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001243112.1",
"strand": false,
"transcript": "NM_001256183.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 2663,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9227,
"cdna_start": 682,
"cds_end": null,
"cds_length": 7992,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000642600.2",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000495226.1",
"strand": false,
"transcript": "ENST00000642600.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 421,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2043,
"cdna_start": 306,
"cds_end": null,
"cds_length": 1266,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000644285.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000496476.1",
"strand": false,
"transcript": "ENST00000644285.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 272,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1179,
"cdna_start": 480,
"cds_end": null,
"cds_length": 819,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000646975.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000495608.1",
"strand": false,
"transcript": "ENST00000646975.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 267,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2044,
"cdna_start": 729,
"cds_end": null,
"cds_length": 804,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000642333.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000496651.1",
"strand": false,
"transcript": "ENST00000642333.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 267,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2801,
"cdna_start": 508,
"cds_end": null,
"cds_length": 804,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 7,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000642695.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000495449.1",
"strand": false,
"transcript": "ENST00000642695.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 267,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2740,
"cdna_start": 443,
"cds_end": null,
"cds_length": 804,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 6,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000644784.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000496419.1",
"strand": false,
"transcript": "ENST00000644784.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 267,
"aa_ref": "L",
"aa_start": 102,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2726,
"cdna_start": 503,
"cds_end": null,
"cds_length": 804,
"cds_start": 306,
"consequences": [
"synonymous_variant"
],
"exon_count": 6,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000646838.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.306G>C",
"hgvs_p": "p.Leu102Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000495124.1",
"strand": false,
"transcript": "ENST00000646838.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 97,
"aa_ref": "L",
"aa_start": 76,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 490,
"cdna_start": 424,
"cds_end": null,
"cds_length": 294,
"cds_start": 228,
"consequences": [
"synonymous_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000646166.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.228G>C",
"hgvs_p": "p.Leu76Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000493980.1",
"strand": false,
"transcript": "ENST00000646166.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 943,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2915,
"cdna_start": null,
"cds_end": null,
"cds_length": 2834,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 6,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000642443.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "c.227-2434G>C",
"hgvs_p": null,
"intron_rank": 3,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000493644.1",
"strand": false,
"transcript": "ENST00000642443.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 8661,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 14,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000330736.10",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.*109G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000330815.5",
"strand": false,
"transcript": "ENST00000330736.10",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1992,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 10,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000378332.7",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.*568G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000367583.2",
"strand": false,
"transcript": "ENST00000378332.7",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2797,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 7,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000562275.6",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.*109G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000454550.1",
"strand": false,
"transcript": "ENST00000562275.6",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 471,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 3,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000564553.5",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.339G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000564553.5",
"transcript_support_level": 3
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2871,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000643964.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.*109G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000495181.1",
"strand": false,
"transcript": "ENST00000643964.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1075,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000645278.1",
"gene_hgnc_id": 21316,
"gene_symbol": "ANKRD11",
"hgvs_c": "n.425G>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000494850.1",
"strand": false,
"transcript": "ENST00000645278.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 2028,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000646345.1",
"gene_hgnc_id": 21316,
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}