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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-12996564-G-GC (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=12996564&ref=G&alt=GC&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PVS1",
"PM2",
"PP5_Moderate"
],
"effects": [
"frameshift_variant"
],
"gene_symbol": "ELAC2",
"hgnc_id": 14198,
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"inheritance_mode": "AR",
"pathogenic_score": 12,
"score": 12,
"transcript": "NM_018127.7",
"verdict": "Pathogenic"
}
],
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5_Moderate",
"acmg_score": 12,
"allele_count_reference_population": 17,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "GC",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "17",
"clinvar_classification": "Pathogenic",
"clinvar_disease": " 2, hereditary,Combined oxidative phosphorylation defect type 17,Prostate cancer",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "P:1",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 826,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3767,
"cdna_start": 1721,
"cds_end": null,
"cds_length": 2481,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_018127.7",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000338034.9",
"protein_coding": true,
"protein_id": "NP_060597.4",
"strand": false,
"transcript": "NM_018127.7",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 826,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 3767,
"cdna_start": 1721,
"cds_end": null,
"cds_length": 2481,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000338034.9",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_018127.7",
"protein_coding": true,
"protein_id": "ENSP00000337445.4",
"strand": false,
"transcript": "ENST00000338034.9",
"transcript_support_level": 1
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 860,
"aa_ref": "L",
"aa_start": 581,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3069,
"cdna_start": 1802,
"cds_end": null,
"cds_length": 2583,
"cds_start": 1743,
"consequences": [
"frameshift_variant"
],
"exon_count": 25,
"exon_rank": 18,
"exon_rank_end": null,
"feature": "ENST00000923774.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1743dupG",
"hgvs_p": "p.His582fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593833.1",
"strand": false,
"transcript": "ENST00000923774.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 834,
"aa_ref": "L",
"aa_start": 555,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2996,
"cdna_start": 1729,
"cds_end": null,
"cds_length": 2505,
"cds_start": 1665,
"consequences": [
"frameshift_variant"
],
"exon_count": 25,
"exon_rank": 18,
"exon_rank_end": null,
"feature": "ENST00000860253.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1665dupG",
"hgvs_p": "p.His556fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530312.1",
"strand": false,
"transcript": "ENST00000860253.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 830,
"aa_ref": "L",
"aa_start": 551,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2993,
"cdna_start": 1726,
"cds_end": null,
"cds_length": 2493,
"cds_start": 1653,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000923773.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1653dupG",
"hgvs_p": "p.His552fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593832.1",
"strand": false,
"transcript": "ENST00000923773.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 828,
"aa_ref": "L",
"aa_start": 549,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3782,
"cdna_start": 1736,
"cds_end": null,
"cds_length": 2487,
"cds_start": 1647,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000923771.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1647dupG",
"hgvs_p": "p.His550fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593830.1",
"strand": false,
"transcript": "ENST00000923771.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 827,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2991,
"cdna_start": 1721,
"cds_end": null,
"cds_length": 2484,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860251.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530310.1",
"strand": false,
"transcript": "ENST00000860251.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 826,
"aa_ref": "L",
"aa_start": 546,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2988,
"cdna_start": 1718,
"cds_end": null,
"cds_length": 2481,
"cds_start": 1638,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860249.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1638dupG",
"hgvs_p": "p.His547fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530308.1",
"strand": false,
"transcript": "ENST00000860249.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 825,
"aa_ref": "L",
"aa_start": 546,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3764,
"cdna_start": 1718,
"cds_end": null,
"cds_length": 2478,
"cds_start": 1638,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_173717.2",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1638dupG",
"hgvs_p": "p.His547fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_776065.1",
"strand": false,
"transcript": "NM_173717.2",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 825,
"aa_ref": "L",
"aa_start": 546,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4128,
"cdna_start": 1740,
"cds_end": null,
"cds_length": 2478,
"cds_start": 1638,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860246.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1638dupG",
"hgvs_p": "p.His547fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530305.1",
"strand": false,
"transcript": "ENST00000860246.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 824,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4105,
"cdna_start": 1721,
"cds_end": null,
"cds_length": 2475,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860247.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530306.1",
"strand": false,
"transcript": "ENST00000860247.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 824,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2980,
"cdna_start": 1721,
"cds_end": null,
"cds_length": 2475,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000961321.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000631380.1",
"strand": false,
"transcript": "ENST00000961321.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 823,
"aa_ref": "L",
"aa_start": 546,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3756,
"cdna_start": 1718,
"cds_end": null,
"cds_length": 2472,
"cds_start": 1638,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000923772.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1638dupG",
"hgvs_p": "p.His547fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593831.1",
"strand": false,
"transcript": "ENST00000923772.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 819,
"aa_ref": "L",
"aa_start": 540,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2960,
"cdna_start": 1696,
"cds_end": null,
"cds_length": 2460,
"cds_start": 1620,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000961322.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1620dupG",
"hgvs_p": "p.His541fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000631381.1",
"strand": false,
"transcript": "ENST00000961322.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 813,
"aa_ref": "L",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2926,
"cdna_start": 1700,
"cds_end": null,
"cds_length": 2442,
"cds_start": 1641,
"consequences": [
"frameshift_variant"
],
"exon_count": 23,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000923775.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1641dupG",
"hgvs_p": "p.His548fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593834.1",
"strand": false,
"transcript": "ENST00000923775.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 812,
"aa_ref": "L",
"aa_start": 533,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2946,
"cdna_start": 1679,
"cds_end": null,
"cds_length": 2439,
"cds_start": 1599,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860250.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1599dupG",
"hgvs_p": "p.His534fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530309.1",
"strand": false,
"transcript": "ENST00000860250.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 811,
"aa_ref": "L",
"aa_start": 532,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2882,
"cdna_start": 1615,
"cds_end": null,
"cds_length": 2436,
"cds_start": 1596,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000860254.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1596dupG",
"hgvs_p": "p.His533fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530313.1",
"strand": false,
"transcript": "ENST00000860254.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 807,
"aa_ref": "L",
"aa_start": 528,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2924,
"cdna_start": 1658,
"cds_end": null,
"cds_length": 2424,
"cds_start": 1584,
"consequences": [
"frameshift_variant"
],
"exon_count": 24,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000395962.6",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1584dupG",
"hgvs_p": "p.His529fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000379291.1",
"strand": false,
"transcript": "ENST00000395962.6",
"transcript_support_level": 2
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 803,
"aa_ref": "L",
"aa_start": 524,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2928,
"cdna_start": 1661,
"cds_end": null,
"cds_length": 2412,
"cds_start": 1572,
"consequences": [
"frameshift_variant"
],
"exon_count": 23,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000961320.1",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1572dupG",
"hgvs_p": "p.His525fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000631379.1",
"strand": false,
"transcript": "ENST00000961320.1",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 786,
"aa_ref": "L",
"aa_start": 507,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3647,
"cdna_start": 1601,
"cds_end": null,
"cds_length": 2361,
"cds_start": 1521,
"consequences": [
"frameshift_variant"
],
"exon_count": 23,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001165962.2",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1521dupG",
"hgvs_p": "p.His508fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001159434.1",
"strand": false,
"transcript": "NM_001165962.2",
"transcript_support_level": null
},
{
"aa_alt": "L?",
"aa_end": null,
"aa_length": 786,
"aa_ref": "L",
"aa_start": 507,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2671,
"cdna_start": 1573,
"cds_end": null,
"cds_length": 2361,
"cds_start": 1521,
"consequences": [
"frameshift_variant"
],
"exon_count": 23,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000426905.7",
"gene_hgnc_id": 14198,
"gene_symbol": "ELAC2",
"hgvs_c": "c.1521dupG",
"hgvs_p": "p.His508fs",
"intron_rank": null,
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