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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-17797984-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=17797984&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 17797984,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000353383.6",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "NM_030665.4",
"protein_id": "NP_109590.3",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5520,
"cdna_end": null,
"cdna_length": 7677,
"mane_select": "ENST00000353383.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "ENST00000353383.6",
"protein_id": "ENSP00000323074.4",
"transcript_support_level": 1,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5520,
"cdna_end": null,
"cdna_length": 7677,
"mane_select": "NM_030665.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_017024027.2",
"protein_id": "XP_016879516.2",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5254,
"cdna_end": null,
"cdna_length": 7411,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_017024028.3",
"protein_id": "XP_016879517.2",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5192,
"cdna_end": null,
"cdna_length": 7349,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_047435149.1",
"protein_id": "XP_047291105.1",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5681,
"cdna_end": null,
"cdna_length": 7838,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_047435150.1",
"protein_id": "XP_047291106.1",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5154,
"cdna_end": null,
"cdna_length": 7311,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_047435151.1",
"protein_id": "XP_047291107.1",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 7802,
"cdna_end": null,
"cdna_length": 9959,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_047435152.1",
"protein_id": "XP_047291108.1",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5678,
"cdna_end": null,
"cdna_length": 7835,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val",
"transcript": "XM_047435153.1",
"protein_id": "XP_047291109.1",
"transcript_support_level": null,
"aa_start": 1679,
"aa_end": null,
"aa_length": 1906,
"cds_start": 5036,
"cds_end": null,
"cds_length": 5721,
"cdna_start": 5388,
"cdna_end": null,
"cdna_length": 7545,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "RAI1",
"gene_hgnc_id": 9834,
"dbsnp": "rs142981643",
"frequency_reference_population": 0.0010699104,
"hom_count_reference_population": 3,
"allele_count_reference_population": 1727,
"gnomad_exomes_af": 0.0011157,
"gnomad_genomes_af": 0.000630368,
"gnomad_exomes_ac": 1631,
"gnomad_genomes_ac": 96,
"gnomad_exomes_homalt": 3,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.021621018648147583,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.089,
"revel_prediction": "Benign",
"alphamissense_score": 0.1516,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.48,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.811,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BS1,BS2",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000353383.6",
"gene_symbol": "RAI1",
"hgnc_id": 9834,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.5036C>T",
"hgvs_p": "p.Ala1679Val"
}
],
"clinvar_disease": "Inborn genetic diseases,RAI1-related disorder,not provided,not specified",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:1 LB:5 B:1",
"phenotype_combined": "not specified|Inborn genetic diseases|RAI1-related disorder|not provided",
"pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
"custom_annotations": null
}
],
"message": null
}