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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-44115817-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=44115817&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 44115817,
"ref": "G",
"alt": "T",
"effect": "intron_variant",
"transcript": "NM_001015053.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "NM_005474.5",
"protein_id": "NP_005465.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1122,
"cds_start": null,
"cds_end": null,
"cds_length": 3369,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5319,
"mane_select": "ENST00000682912.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005474.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000682912.1",
"protein_id": "ENSP00000507606.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1122,
"cds_start": null,
"cds_end": null,
"cds_length": 3369,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5319,
"mane_select": "NM_005474.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000682912.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000586802.5",
"protein_id": "ENSP00000468004.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1122,
"cds_start": null,
"cds_end": null,
"cds_length": 3369,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3662,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000586802.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000336057.9",
"protein_id": "ENSP00000337290.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1037,
"cds_start": null,
"cds_end": null,
"cds_length": 3114,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5040,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000336057.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864920.1",
"protein_id": "ENSP00000534979.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1160,
"cds_start": null,
"cds_end": null,
"cds_length": 3483,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3862,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864920.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864908.1",
"protein_id": "ENSP00000534967.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1128,
"cds_start": null,
"cds_end": null,
"cds_length": 3387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3809,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864908.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864917.1",
"protein_id": "ENSP00000534976.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1127,
"cds_start": null,
"cds_end": null,
"cds_length": 3384,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3781,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864917.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000925831.1",
"protein_id": "ENSP00000595890.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1126,
"cds_start": null,
"cds_end": null,
"cds_length": 3381,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3778,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925831.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "NM_001015053.2",
"protein_id": "NP_001015053.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1123,
"cds_start": null,
"cds_end": null,
"cds_length": 3372,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5322,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001015053.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000225983.10",
"protein_id": "ENSP00000225983.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1123,
"cds_start": null,
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"cds_length": 3372,
"cdna_start": null,
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"cdna_length": 5326,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000225983.10"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864902.1",
"protein_id": "ENSP00000534961.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1123,
"cds_start": null,
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"cdna_start": null,
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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"transcript": "ENST00000864918.1",
"protein_id": "ENSP00000534977.1",
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"biotype": "protein_coding",
"feature": "ENST00000864918.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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"transcript": "NM_001382393.1",
"protein_id": "NP_001369322.1",
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"mane_select": null,
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"biotype": "protein_coding",
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},
{
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],
"exon_rank": null,
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 2,
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"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864905.1",
"protein_id": "ENSP00000534964.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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"feature": "ENST00000864912.1"
},
{
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"protein_coding": true,
"strand": false,
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],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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"transcript": "ENST00000864913.1",
"protein_id": "ENSP00000534972.1",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000968361.1",
"protein_id": "ENSP00000638420.1",
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},
{
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],
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"gene_symbol": "HDAC5",
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},
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"strand": false,
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],
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"gene_symbol": "HDAC5",
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},
{
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"consequences": [
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],
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"gene_symbol": "HDAC5",
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"hgvs_c": "c.22+1677C>A",
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"transcript": "ENST00000864900.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000864900.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HDAC5",
"gene_hgnc_id": 14068,
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null,
"transcript": "ENST00000864914.1",
"protein_id": "ENSP00000534973.1",
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"aa_start": null,
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"aa_length": 1118,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000864914.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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"biotype": "protein_coding",
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{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": null,
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"gene_symbol": "ENSG00000267638",
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"hgvs_c": "n.-95G>T",
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"transcript": "ENST00000585899.1",
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"biotype": "pseudogene",
"feature": "ENST00000585899.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
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],
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"gene_symbol": "LOC105371789",
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"hgvs_c": "n.-95G>T",
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"transcript": "NR_136415.1",
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"biotype": "pseudogene",
"feature": "NR_136415.1"
}
],
"gene_symbol": "HDAC5",
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"dbsnp": "rs228769",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 0,
"gnomad_genomes_af": 0.0000065799,
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"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
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"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.7400000095367432,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.74,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.047,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001015053.2",
"gene_symbol": "HDAC5",
"hgnc_id": 14068,
"effects": [
"intron_variant"
],
"inheritance_mode": "Unknown",
"hgvs_c": "c.22+1677C>A",
"hgvs_p": null
},
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000585899.1",
"gene_symbol": "ENSG00000267638",
"hgnc_id": null,
"effects": [
"upstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.-95G>T",
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},
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NR_136415.1",
"gene_symbol": "LOC105371789",
"hgnc_id": null,
"effects": [
"upstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.-95G>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}