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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-44911374-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=44911374&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 44911374,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000588735.3",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "NM_002055.5",
"protein_id": "NP_002046.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 432,
"cds_start": 989,
"cds_end": null,
"cds_length": 1299,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 5501,
"mane_select": "ENST00000588735.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "ENST00000588735.3",
"protein_id": "ENSP00000466598.2",
"transcript_support_level": 1,
"aa_start": 330,
"aa_end": null,
"aa_length": 432,
"cds_start": 989,
"cds_end": null,
"cds_length": 1299,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 5501,
"mane_select": "NM_002055.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.142G>T",
"hgvs_p": null,
"transcript": "ENST00000585543.6",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 594,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.2143G>T",
"hgvs_p": null,
"transcript": "ENST00000591327.2",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3255,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "ENST00000639277.1",
"protein_id": "ENSP00000492432.1",
"transcript_support_level": 5,
"aa_start": 330,
"aa_end": null,
"aa_length": 505,
"cds_start": 989,
"cds_end": null,
"cds_length": 1518,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 1783,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "NM_001363846.2",
"protein_id": "NP_001350775.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 472,
"cds_start": 989,
"cds_end": null,
"cds_length": 1419,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 3154,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "ENST00000253408.11",
"protein_id": "ENSP00000253408.5",
"transcript_support_level": 5,
"aa_start": 330,
"aa_end": null,
"aa_length": 472,
"cds_start": 989,
"cds_end": null,
"cds_length": 1419,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 3154,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "NM_001242376.3",
"protein_id": "NP_001229305.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 438,
"cds_start": 989,
"cds_end": null,
"cds_length": 1317,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 2128,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "ENST00000638281.1",
"protein_id": "ENSP00000491088.1",
"transcript_support_level": 5,
"aa_start": 330,
"aa_end": null,
"aa_length": 438,
"cds_start": 989,
"cds_end": null,
"cds_length": 1317,
"cdna_start": 989,
"cdna_end": null,
"cdna_length": 2099,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "NM_001131019.3",
"protein_id": "NP_001124491.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 431,
"cds_start": 989,
"cds_end": null,
"cds_length": 1296,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 1774,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.989G>T",
"hgvs_p": "p.Arg330Leu",
"transcript": "ENST00000435360.8",
"protein_id": "ENSP00000403962.1",
"transcript_support_level": 2,
"aa_start": 330,
"aa_end": null,
"aa_length": 431,
"cds_start": 989,
"cds_end": null,
"cds_length": 1296,
"cdna_start": 1003,
"cdna_end": null,
"cdna_length": 1774,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.644G>T",
"hgvs_p": "p.Arg215Leu",
"transcript": "ENST00000638618.1",
"protein_id": "ENSP00000492832.1",
"transcript_support_level": 5,
"aa_start": 215,
"aa_end": null,
"aa_length": 326,
"cds_start": 644,
"cds_end": null,
"cds_length": 981,
"cdna_start": 644,
"cdna_end": null,
"cdna_length": 989,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.*388G>T",
"hgvs_p": null,
"transcript": "ENST00000376990.8",
"protein_id": "ENSP00000366189.4",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1013,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.1518G>T",
"hgvs_p": null,
"transcript": "ENST00000586127.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 1678,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.465G>T",
"hgvs_p": null,
"transcript": "ENST00000587997.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 609,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.369G>T",
"hgvs_p": null,
"transcript": "ENST00000588640.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 566,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.1003G>T",
"hgvs_p": null,
"transcript": "ENST00000640552.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3573,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "n.*388G>T",
"hgvs_p": null,
"transcript": "ENST00000376990.8",
"protein_id": "ENSP00000366189.4",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1013,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.907-53G>T",
"hgvs_p": null,
"transcript": "ENST00000586793.6",
"protein_id": "ENSP00000468500.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 333,
"cds_start": -4,
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"cds_length": 1004,
"cdna_start": null,
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"cdna_length": 1018,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.619-53G>T",
"hgvs_p": null,
"transcript": "ENST00000592320.6",
"protein_id": "ENSP00000465320.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 247,
"cds_start": -4,
"cds_end": null,
"cds_length": 745,
"cdna_start": null,
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"cdna_length": 763,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.-77G>T",
"hgvs_p": null,
"transcript": "ENST00000586125.2",
"protein_id": "ENSP00000467397.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 124,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2542,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.-83G>T",
"hgvs_p": null,
"transcript": "ENST00000591880.2",
"protein_id": "ENSP00000467530.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 74,
"cds_start": -4,
"cds_end": null,
"cds_length": 225,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1103,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GFAP",
"gene_hgnc_id": 4235,
"hgvs_c": "c.-95G>T",
"hgvs_p": null,
"transcript": "ENST00000638304.1",
"protein_id": "ENSP00000491042.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 68,
"cds_start": -4,
"cds_end": null,
"cds_length": 207,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2139,
"mane_select": null,
"mane_plus": null,
"biotype": null,
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},
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}
],
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"allele_count_reference_population": 1,
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"gnomad_genomes_ac": 1,
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"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
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"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.1609,
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"bayesdelnoaf_score": 0.06,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 5.029,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"acmg_score": 5,
"acmg_classification": "Uncertain_significance",
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"acmg_by_gene": [
{
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"PM2",
"PP3"
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"verdict": "Uncertain_significance",
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"gene_symbol": "GFAP",
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"effects": [
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],
"inheritance_mode": "AD",
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"hgvs_p": "p.Arg330Leu"
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],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}