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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-46932200-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=46932200&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 46932200,
      "ref": "G",
      "alt": "A",
      "effect": "splice_donor_variant,intron_variant",
      "transcript": "ENST00000640051.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "NM_004287.5",
          "protein_id": "NP_004278.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 212,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 639,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3932,
          "mane_select": "ENST00000640051.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000640051.2",
          "protein_id": "ENSP00000492751.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 212,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 639,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3932,
          "mane_select": "NM_004287.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000225567.9",
          "protein_id": "ENSP00000225567.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1245,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000640621.1",
          "protein_id": "ENSP00000492830.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 195,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 588,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3059,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000262633",
          "gene_hgnc_id": null,
          "hgvs_c": "n.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000571841.1",
          "protein_id": "ENSP00000461460.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 889,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.337G>A",
          "hgvs_p": "p.Val113Ile",
          "transcript": "ENST00000575949.6",
          "protein_id": "ENSP00000458911.1",
          "transcript_support_level": 2,
          "aa_start": 113,
          "aa_end": null,
          "aa_length": 143,
          "cds_start": 337,
          "cds_end": null,
          "cds_length": 432,
          "cdna_start": 377,
          "cdna_end": null,
          "cdna_length": 1444,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.331G>A",
          "hgvs_p": "p.Val111Ile",
          "transcript": "ENST00000640007.1",
          "protein_id": "ENSP00000491709.1",
          "transcript_support_level": 5,
          "aa_start": 111,
          "aa_end": null,
          "aa_length": 141,
          "cds_start": 331,
          "cds_end": null,
          "cds_length": 426,
          "cdna_start": 363,
          "cdna_end": null,
          "cdna_length": 1425,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.283G>A",
          "hgvs_p": "p.Val95Ile",
          "transcript": "ENST00000571048.1",
          "protein_id": "ENSP00000492595.1",
          "transcript_support_level": 5,
          "aa_start": 95,
          "aa_end": null,
          "aa_length": 107,
          "cds_start": 283,
          "cds_end": null,
          "cds_length": 325,
          "cdna_start": 775,
          "cdna_end": null,
          "cdna_length": 817,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "n.2775G>A",
          "hgvs_p": null,
          "transcript": "ENST00000571658.2",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3820,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "n.1251G>A",
          "hgvs_p": null,
          "transcript": "ENST00000640709.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2679,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "NM_001321133.2",
          "protein_id": "NP_001308062.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 257,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 774,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1083,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000573224.2",
          "protein_id": "ENSP00000461784.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 257,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 774,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1115,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "NM_054022.4",
          "protein_id": "NP_473363.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2082,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.273+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000640723.1",
          "protein_id": "ENSP00000492206.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 941,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.333+1G>A",
          "hgvs_p": null,
          "transcript": "NM_001353114.2",
          "protein_id": "NP_001340043.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 211,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 636,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3929,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.333+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000638838.1",
          "protein_id": "ENSP00000492524.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 211,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 636,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3266,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.330+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000576910.7",
          "protein_id": "ENSP00000461673.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 210,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 633,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1891,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000638697.1",
          "protein_id": "ENSP00000492360.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 197,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 594,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1705,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.447+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000570879.2",
          "protein_id": "ENSP00000458154.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 196,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 592,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 710,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "GOSR2",
          "gene_hgnc_id": 4431,
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null,
          "transcript": "ENST00000623037.2",
          "protein_id": "ENSP00000492669.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 196,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 591,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1814,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_donor_variant",
            "intron_variant"
          ],
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      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.34,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 9.763,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.99,
      "spliceai_max_prediction": "Pathogenic",
      "dbscsnv_ada_score": 0.999990361384395,
      "dbscsnv_ada_prediction": "Pathogenic",
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 16,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 16,
          "benign_score": 0,
          "pathogenic_score": 16,
          "criteria": [
            "PVS1",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000640051.2",
          "gene_symbol": "GOSR2",
          "hgnc_id": 4431,
          "effects": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "inheritance_mode": "AR,Unknown",
          "hgvs_c": "c.336+1G>A",
          "hgvs_p": null
        },
        {
          "score": 8,
          "benign_score": 0,
          "pathogenic_score": 8,
          "criteria": [
            "PP5_Very_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000571841.1",
          "gene_symbol": "ENSG00000262633",
          "hgnc_id": null,
          "effects": [
            "splice_donor_variant",
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.336+1G>A",
          "hgvs_p": null
        },
        {
          "score": 12,
          "benign_score": 0,
          "pathogenic_score": 12,
          "criteria": [
            "PP3_Strong",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "XM_024450773.2",
          "gene_symbol": "LRRC37A2",
          "hgnc_id": 32404,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.4810-116856G>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " congenital, with or without seizures,GOSR2-related disorder,Inborn genetic diseases,Muscular dystrophy,Progressive myoclonic epilepsy,Progressive myoclonic epilepsy type 6,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:4 LP:6",
      "phenotype_combined": "Progressive myoclonic epilepsy type 6|not provided|Progressive myoclonic epilepsy|Inborn genetic diseases|GOSR2-related disorder|Muscular dystrophy, congenital, with or without seizures",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}