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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-7225007-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=7225007&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 7225007,
      "ref": "G",
      "alt": "A",
      "effect": "stop_gained",
      "transcript": "NM_001270447.2",
      "consequences": [
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1878G>A",
          "hgvs_p": "p.Trp626*",
          "transcript": "NM_000018.4",
          "protein_id": "NP_000009.1",
          "transcript_support_level": null,
          "aa_start": 626,
          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1878,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000356839.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000018.4"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1878G>A",
          "hgvs_p": "p.Trp626*",
          "transcript": "ENST00000356839.10",
          "protein_id": "ENSP00000349297.5",
          "transcript_support_level": 1,
          "aa_start": 626,
          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1878,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000018.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000356839.10"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1812G>A",
          "hgvs_p": "p.Trp604*",
          "transcript": "ENST00000350303.9",
          "protein_id": "ENSP00000344152.5",
          "transcript_support_level": 1,
          "aa_start": 604,
          "aa_end": null,
          "aa_length": 633,
          "cds_start": 1812,
          "cds_end": null,
          "cds_length": 1902,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000350303.9"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1947G>A",
          "hgvs_p": "p.Trp649*",
          "transcript": "NM_001270447.2",
          "protein_id": "NP_001257376.1",
          "transcript_support_level": null,
          "aa_start": 649,
          "aa_end": null,
          "aa_length": 678,
          "cds_start": 1947,
          "cds_end": null,
          "cds_length": 2037,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001270447.2"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1947G>A",
          "hgvs_p": "p.Trp649*",
          "transcript": "ENST00000543245.6",
          "protein_id": "ENSP00000438689.2",
          "transcript_support_level": 2,
          "aa_start": 649,
          "aa_end": null,
          "aa_length": 678,
          "cds_start": 1947,
          "cds_end": null,
          "cds_length": 2037,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000543245.6"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1920G>A",
          "hgvs_p": "p.Trp640*",
          "transcript": "ENST00000945302.1",
          "protein_id": "ENSP00000615361.1",
          "transcript_support_level": null,
          "aa_start": 640,
          "aa_end": null,
          "aa_length": 669,
          "cds_start": 1920,
          "cds_end": null,
          "cds_length": 2010,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945302.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1908G>A",
          "hgvs_p": "p.Trp636*",
          "transcript": "ENST00000883761.1",
          "protein_id": "ENSP00000553820.1",
          "transcript_support_level": null,
          "aa_start": 636,
          "aa_end": null,
          "aa_length": 665,
          "cds_start": 1908,
          "cds_end": null,
          "cds_length": 1998,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883761.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1902G>A",
          "hgvs_p": "p.Trp634*",
          "transcript": "ENST00000945308.1",
          "protein_id": "ENSP00000615367.1",
          "transcript_support_level": null,
          "aa_start": 634,
          "aa_end": null,
          "aa_length": 663,
          "cds_start": 1902,
          "cds_end": null,
          "cds_length": 1992,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945308.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1896G>A",
          "hgvs_p": "p.Trp632*",
          "transcript": "ENST00000883770.1",
          "protein_id": "ENSP00000553829.1",
          "transcript_support_level": null,
          "aa_start": 632,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": 1896,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883770.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1878G>A",
          "hgvs_p": "p.Trp626*",
          "transcript": "ENST00000916066.1",
          "protein_id": "ENSP00000586125.1",
          "transcript_support_level": null,
          "aa_start": 626,
          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1878,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000916066.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1878G>A",
          "hgvs_p": "p.Trp626*",
          "transcript": "ENST00000916068.1",
          "protein_id": "ENSP00000586127.1",
          "transcript_support_level": null,
          "aa_start": 626,
          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1878,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000916068.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1875G>A",
          "hgvs_p": "p.Trp625*",
          "transcript": "ENST00000883764.1",
          "protein_id": "ENSP00000553823.1",
          "transcript_support_level": null,
          "aa_start": 625,
          "aa_end": null,
          "aa_length": 654,
          "cds_start": 1875,
          "cds_end": null,
          "cds_length": 1965,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883764.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1869G>A",
          "hgvs_p": "p.Trp623*",
          "transcript": "ENST00000883757.1",
          "protein_id": "ENSP00000553816.1",
          "transcript_support_level": null,
          "aa_start": 623,
          "aa_end": null,
          "aa_length": 652,
          "cds_start": 1869,
          "cds_end": null,
          "cds_length": 1959,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883757.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1869G>A",
          "hgvs_p": "p.Trp623*",
          "transcript": "ENST00000945291.1",
          "protein_id": "ENSP00000615350.1",
          "transcript_support_level": null,
          "aa_start": 623,
          "aa_end": null,
          "aa_length": 652,
          "cds_start": 1869,
          "cds_end": null,
          "cds_length": 1959,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945291.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1866G>A",
          "hgvs_p": "p.Trp622*",
          "transcript": "ENST00000945298.1",
          "protein_id": "ENSP00000615357.1",
          "transcript_support_level": null,
          "aa_start": 622,
          "aa_end": null,
          "aa_length": 651,
          "cds_start": 1866,
          "cds_end": null,
          "cds_length": 1956,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945298.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1863G>A",
          "hgvs_p": "p.Trp621*",
          "transcript": "ENST00000945297.1",
          "protein_id": "ENSP00000615356.1",
          "transcript_support_level": null,
          "aa_start": 621,
          "aa_end": null,
          "aa_length": 650,
          "cds_start": 1863,
          "cds_end": null,
          "cds_length": 1953,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945297.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1854G>A",
          "hgvs_p": "p.Trp618*",
          "transcript": "ENST00000883762.1",
          "protein_id": "ENSP00000553821.1",
          "transcript_support_level": null,
          "aa_start": 618,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 1854,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883762.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1854G>A",
          "hgvs_p": "p.Trp618*",
          "transcript": "ENST00000883763.1",
          "protein_id": "ENSP00000553822.1",
          "transcript_support_level": null,
          "aa_start": 618,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 1854,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000883763.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1854G>A",
          "hgvs_p": "p.Trp618*",
          "transcript": "ENST00000945292.1",
          "protein_id": "ENSP00000615351.1",
          "transcript_support_level": null,
          "aa_start": 618,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 1854,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945292.1"
        },
        {
          "aa_ref": "W",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADVL",
          "gene_hgnc_id": 92,
          "hgvs_c": "c.1851G>A",
          "hgvs_p": "p.Trp617*",
          "transcript": "ENST00000945303.1",
          "protein_id": "ENSP00000615362.1",
          "transcript_support_level": null,
          "aa_start": 617,
          "aa_end": null,
          "aa_length": 646,
          "cds_start": 1851,
          "cds_end": null,
          "cds_length": 1941,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000945303.1"
        },
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      "gene_symbol": "ACADVL",
      "gene_hgnc_id": 92,
      "dbsnp": "rs1555529186",
      "frequency_reference_population": 6.8409094e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
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      "gnomad_exomes_homalt": 0,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.3100000023841858,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
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      "alphamissense_score": null,
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      "bayesdelnoaf_score": 0.31,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 0.415,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "mitotip_score": null,
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      "acmg_score": 4,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PVS1_Moderate,PM2",
      "acmg_by_gene": [
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PVS1_Moderate",
            "PM2"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001270447.2",
          "gene_symbol": "ACADVL",
          "hgnc_id": 92,
          "effects": [
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          "inheritance_mode": "AR",
          "hgvs_c": "c.1947G>A",
          "hgvs_p": "p.Trp649*"
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      ],
      "clinvar_disease": "Very long chain acyl-CoA dehydrogenase deficiency,not provided",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "P:2 LP:4 US:1",
      "phenotype_combined": "Very long chain acyl-CoA dehydrogenase deficiency|not provided",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.