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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-78674151-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=78674151&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 78674151,
"ref": "C",
"alt": "G",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000446868.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_004762.6",
"protein_id": "NP_004753.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 398,
"cds_start": -4,
"cds_end": null,
"cds_length": 1197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3290,
"mane_select": "ENST00000446868.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "ENST00000446868.8",
"protein_id": "ENSP00000389095.3",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 398,
"cds_start": -4,
"cds_end": null,
"cds_length": 1197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3290,
"mane_select": "NM_004762.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 1,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "n.4321G>C",
"hgvs_p": null,
"transcript": "ENST00000586299.1",
"protein_id": null,
"transcript_support_level": 6,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4423,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000294389",
"gene_hgnc_id": null,
"hgvs_c": "n.320C>G",
"hgvs_p": null,
"transcript": "ENST00000723284.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 328,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_001365040.2",
"protein_id": "NP_001351969.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 399,
"cds_start": -4,
"cds_end": null,
"cds_length": 1200,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3426,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "ENST00000589768.6",
"protein_id": "ENSP00000467052.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 399,
"cds_start": -4,
"cds_end": null,
"cds_length": 1200,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3398,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_017456.4",
"protein_id": "NP_059430.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 397,
"cds_start": -4,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3287,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "ENST00000591455.5",
"protein_id": "ENSP00000465665.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 397,
"cds_start": -4,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3286,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*2047G>C",
"hgvs_p": null,
"transcript": "NM_001365037.2",
"protein_id": "NP_001351966.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 380,
"cds_start": -4,
"cds_end": null,
"cds_length": 1143,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3343,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*6035G>C",
"hgvs_p": null,
"transcript": "NM_001394677.1",
"protein_id": "NP_001381606.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 372,
"cds_start": -4,
"cds_end": null,
"cds_length": 1119,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7307,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_001292018.4",
"protein_id": "NP_001278947.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 339,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 3572,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_001292019.4",
"protein_id": "NP_001278948.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "ENST00000585509.5",
"protein_id": "ENSP00000465940.1",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
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"exon_count": 14,
"intron_rank": null,
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"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
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"transcript": "ENST00000589297.5",
"protein_id": "ENSP00000466512.1",
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},
{
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],
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"intron_rank": null,
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"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
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"transcript": "NM_001365038.2",
"protein_id": "NP_001351967.1",
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"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
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"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
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"transcript": "NM_001365039.2",
"protein_id": "NP_001351968.1",
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},
{
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"strand": false,
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],
"exon_rank": 13,
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"intron_rank": null,
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"gene_symbol": "CYTH1",
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"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_001365041.3",
"protein_id": "NP_001351970.1",
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"cds_start": -4,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
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"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "NM_001394676.1",
"protein_id": "NP_001381605.1",
"transcript_support_level": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
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"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*6035G>C",
"hgvs_p": null,
"transcript": "NM_001394678.1",
"protein_id": "NP_001381607.1",
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},
{
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],
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"exon_count": 4,
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"gene_symbol": "CYTH1",
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"hgvs_c": "c.*1787G>C",
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"transcript": "ENST00000589296.5",
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},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
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"intron_rank": null,
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"gene_symbol": "CYTH1",
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"hgvs_c": "c.*1940G>C",
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"transcript": "XM_047437076.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*1940G>C",
"hgvs_p": null,
"transcript": "XM_047437077.1",
"protein_id": "XP_047293033.1",
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYTH1",
"gene_hgnc_id": 9501,
"hgvs_c": "c.*2872G>C",
"hgvs_p": null,
"transcript": "XM_011525475.4",
"protein_id": "XP_011523777.2",
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"aa_start": null,
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"cdna_start": null,
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"mane_select": null,
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{
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}
],
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}