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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-79935827-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=79935827&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 79935827,
"ref": "G",
"alt": "T",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000310924.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "NM_019020.4",
"protein_id": "NP_061893.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 767,
"cds_start": -4,
"cds_end": null,
"cds_length": 2304,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10960,
"mane_select": "ENST00000310924.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "ENST00000310924.7",
"protein_id": "ENSP00000309794.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 767,
"cds_start": -4,
"cds_end": null,
"cds_length": 2304,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10960,
"mane_select": "NM_019020.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "ENST00000576768.5",
"protein_id": "ENSP00000461522.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 392,
"cds_start": -4,
"cds_end": null,
"cds_length": 1179,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6342,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "NM_001271845.2",
"protein_id": "NP_001258774.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 405,
"cds_start": -4,
"cds_end": null,
"cds_length": 1218,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9826,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "NM_001271844.2",
"protein_id": "NP_001258773.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 392,
"cds_start": -4,
"cds_end": null,
"cds_length": 1179,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9787,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "XM_024450577.2",
"protein_id": "XP_024306345.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 824,
"cds_start": -4,
"cds_end": null,
"cds_length": 2475,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 11127,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*4868C>A",
"hgvs_p": null,
"transcript": "XM_024450578.2",
"protein_id": "XP_024306346.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 824,
"cds_start": -4,
"cds_end": null,
"cds_length": 2475,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7682,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "XM_024450579.2",
"protein_id": "XP_024306347.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 823,
"cds_start": -4,
"cds_end": null,
"cds_length": 2472,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 11128,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
"hgvs_p": null,
"transcript": "XM_024450580.2",
"protein_id": "XP_024306348.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 810,
"cds_start": -4,
"cds_end": null,
"cds_length": 2433,
"cdna_start": null,
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"cdna_length": 11089,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*4868C>A",
"hgvs_p": null,
"transcript": "XM_006721694.4",
"protein_id": "XP_006721757.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 767,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
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"exon_count": 13,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*4868C>A",
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"transcript": "XM_047435342.1",
"protein_id": "XP_047291298.1",
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},
{
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"protein_coding": true,
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],
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*4868C>A",
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},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*4868C>A",
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},
{
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"strand": false,
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],
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"intron_rank": null,
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*4868C>A",
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},
{
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],
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*5032C>A",
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"transcript": "XM_047435346.1",
"protein_id": "XP_047291302.1",
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},
{
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],
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"gene_symbol": "TBC1D16",
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"transcript": "XM_047435347.1",
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},
{
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],
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*5032C>A",
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"transcript": "XM_047435349.1",
"protein_id": "XP_047291305.1",
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},
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],
"exon_rank": 10,
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"exon_count": 10,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*5032C>A",
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"transcript": "XM_047435348.1",
"protein_id": "XP_047291304.1",
"transcript_support_level": null,
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},
{
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],
"exon_rank": 11,
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"exon_count": 11,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
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"hgvs_c": "c.*5032C>A",
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},
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],
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"gene_symbol": "TBC1D16",
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},
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],
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
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"exon_count": 10,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
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"transcript": "XM_047435352.1",
"protein_id": "XP_047291308.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
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"exon_count": 10,
"intron_rank": null,
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"gene_symbol": "TBC1D16",
"gene_hgnc_id": 28356,
"hgvs_c": "c.*5032C>A",
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"transcript": "XM_047435353.1",
"protein_id": "XP_047291309.1",
"transcript_support_level": null,
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}
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}