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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-81891535-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=81891535&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 81891535,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_005782.4",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ALYREF",
          "gene_hgnc_id": 19071,
          "hgvs_c": "c.46C>T",
          "hgvs_p": "p.Leu16Leu",
          "transcript": "NM_005782.4",
          "protein_id": "NP_005773.3",
          "transcript_support_level": null,
          "aa_start": 16,
          "aa_end": null,
          "aa_length": 264,
          "cds_start": 46,
          "cds_end": null,
          "cds_length": 795,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000505490.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_005782.4"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ALYREF",
          "gene_hgnc_id": 19071,
          "hgvs_c": "c.46C>T",
          "hgvs_p": "p.Leu16Leu",
          "transcript": "ENST00000505490.3",
          "protein_id": "ENSP00000421592.2",
          "transcript_support_level": 1,
          "aa_start": 16,
          "aa_end": null,
          "aa_length": 264,
          "cds_start": 46,
          "cds_end": null,
          "cds_length": 795,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_005782.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000505490.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ALYREF",
          "gene_hgnc_id": 19071,
          "hgvs_c": "c.46C>T",
          "hgvs_p": "p.Leu16Leu",
          "transcript": "ENST00000864755.1",
          "protein_id": "ENSP00000534814.1",
          "transcript_support_level": null,
          "aa_start": 16,
          "aa_end": null,
          "aa_length": 261,
          "cds_start": 46,
          "cds_end": null,
          "cds_length": 786,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000864755.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-75+684G>A",
          "hgvs_p": null,
          "transcript": "NM_001289414.1",
          "protein_id": "NP_001276343.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001289414.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-75+684G>A",
          "hgvs_p": null,
          "transcript": "ENST00000571570.5",
          "protein_id": "ENSP00000458143.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000571570.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-12+684G>A",
          "hgvs_p": null,
          "transcript": "ENST00000926462.1",
          "protein_id": "ENSP00000596521.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000926462.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ALYREF",
          "gene_hgnc_id": 19071,
          "hgvs_c": "n.53C>T",
          "hgvs_p": null,
          "transcript": "NR_158770.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_158770.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-381G>A",
          "hgvs_p": null,
          "transcript": "NM_001002248.3",
          "protein_id": "NP_001002248.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000344877.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001002248.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-381G>A",
          "hgvs_p": null,
          "transcript": "ENST00000344877.10",
          "protein_id": "ENSP00000339695.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001002248.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000344877.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-340G>A",
          "hgvs_p": null,
          "transcript": "ENST00000357385.7",
          "protein_id": "ENSP00000349957.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 196,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 591,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000357385.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-310G>A",
          "hgvs_p": null,
          "transcript": "ENST00000571024.6",
          "protein_id": "ENSP00000461648.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000571024.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-340G>A",
          "hgvs_p": null,
          "transcript": "ENST00000572851.6",
          "protein_id": "ENSP00000458265.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
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          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000572851.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-373G>A",
          "hgvs_p": null,
          "transcript": "ENST00000574924.6",
          "protein_id": "ENSP00000460064.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
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          "cds_length": 255,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000574924.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-340G>A",
          "hgvs_p": null,
          "transcript": "NM_001002244.2",
          "protein_id": "NP_001002244.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 196,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 591,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001002244.2"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-310G>A",
          "hgvs_p": null,
          "transcript": "ENST00000926468.1",
          "protein_id": "ENSP00000596527.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 183,
          "cds_start": null,
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          "cds_length": 552,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000926468.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-373G>A",
          "hgvs_p": null,
          "transcript": "ENST00000926469.1",
          "protein_id": "ENSP00000596528.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 183,
          "cds_start": null,
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          "cds_length": 552,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000926469.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-403G>A",
          "hgvs_p": null,
          "transcript": "ENST00000954122.1",
          "protein_id": "ENSP00000624181.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 183,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 552,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954122.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-381G>A",
          "hgvs_p": null,
          "transcript": "ENST00000926475.1",
          "protein_id": "ENSP00000596534.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 116,
          "cds_start": null,
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          "cds_length": 351,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000926475.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-439G>A",
          "hgvs_p": null,
          "transcript": "ENST00000612413.4",
          "protein_id": "ENSP00000484031.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 89,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 270,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000612413.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANAPC11",
          "gene_hgnc_id": 14452,
          "hgvs_c": "c.-310G>A",
          "hgvs_p": null,
          "transcript": "NM_001002245.2",
          "protein_id": "NP_001002245.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001002245.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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      "gnomad_exomes_ac": 16,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.25,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.25,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.383,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
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      "mitotip_score": null,
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      "acmg_score": -8,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Moderate,BP6,BP7,BS2",
      "acmg_by_gene": [
        {
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          "benign_score": 8,
          "pathogenic_score": 0,
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            "BP6",
            "BP7",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_005782.4",
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          "effects": [
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          ],
          "inheritance_mode": "AD",
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        {
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            "BP6"
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          "verdict": "Likely_benign",
          "transcript": "NM_001289414.1",
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          "hgnc_id": 14452,
          "effects": [
            "intron_variant"
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          "inheritance_mode": "AR",
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          "hgvs_p": null
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      ],
      "clinvar_disease": "ALYREF-related disorder",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "ALYREF-related disorder",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}