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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-54284454-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=54284454&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "18",
      "pos": 54284454,
      "ref": "C",
      "alt": "T",
      "effect": "intron_variant",
      "transcript": "ENST00000579534.6",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.1067+441C>T",
          "hgvs_p": null,
          "transcript": "NM_007195.3",
          "protein_id": "NP_009126.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 740,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2223,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6020,
          "mane_select": "ENST00000579534.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.1067+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000579534.6",
          "protein_id": "ENSP00000462664.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 740,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2223,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6020,
          "mane_select": "NM_007195.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.758+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000579434.5",
          "protein_id": "ENSP00000462681.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 637,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1914,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2705,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "n.*162+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000585023.5",
          "protein_id": "ENSP00000463971.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1734,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.992+441C>T",
          "hgvs_p": null,
          "transcript": "NM_001351632.2",
          "protein_id": "NP_001338561.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5963,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.941+441C>T",
          "hgvs_p": null,
          "transcript": "NM_001351610.1",
          "protein_id": "NP_001338539.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 698,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2097,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5932,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.881+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000217800.9",
          "protein_id": "ENSP00000217800.6",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 678,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2037,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2289,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.863+441C>T",
          "hgvs_p": null,
          "transcript": "NM_001351611.2",
          "protein_id": "NP_001338540.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 672,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2019,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6001,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.863+441C>T",
          "hgvs_p": null,
          "transcript": "NM_001351612.2",
          "protein_id": "NP_001338541.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 672,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2019,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6334,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.830+441C>T",
          "hgvs_p": null,
          "transcript": "NM_001351613.1",
          "protein_id": "NP_001338542.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
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          "cdna_length": 5821,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.830+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000406285.7",
          "protein_id": "ENSP00000385196.3",
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          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_rank": null,
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          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "c.758+441C>T",
          "hgvs_p": null,
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          "cds_start": -4,
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        {
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          "exon_rank": null,
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          "intron_rank": 6,
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          "gene_symbol": "POLI",
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          "hgvs_c": "c.758+441C>T",
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        {
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          "gene_symbol": "POLI",
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          "hgvs_c": "c.704+441C>T",
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          "transcript": "NM_001351616.1",
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        {
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        {
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          "gene_symbol": "POLI",
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          "hgvs_c": "c.524+441C>T",
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          "transcript": "NM_001351619.2",
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          ],
          "exon_rank": null,
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          "gene_symbol": "POLI",
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          "gene_symbol": "POLI",
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          "transcript": "ENST00000579823.1",
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        },
        {
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          "strand": true,
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          ],
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          "exon_count": 4,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "POLI",
          "gene_hgnc_id": 9182,
          "hgvs_c": "n.246+441C>T",
          "hgvs_p": null,
          "transcript": "ENST00000577361.5",
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      "gene_symbol": "POLI",
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      "splice_prediction_selected": "Benign",
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      "bayesdelnoaf_score": -1.02,
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      "phylop100way_score": -0.007,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": -12,
      "acmg_classification": "Benign",
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      "acmg_by_gene": [
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          "pathogenic_score": 0,
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          "verdict": "Benign",
          "transcript": "ENST00000579534.6",
          "gene_symbol": "POLI",
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          "effects": [
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          ],
          "inheritance_mode": "",
          "hgvs_c": "c.1067+441C>T",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}