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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-10987836-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=10987836&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 10987836,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001128849.3",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "NM_001387283.1",
          "protein_id": "NP_001374212.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1679,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5040,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "ENST00000646693.2",
          "biotype": "protein_coding",
          "feature": "NM_001387283.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000646693.2",
          "protein_id": "ENSP00000495368.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1679,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5040,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "NM_001387283.1",
          "biotype": "protein_coding",
          "feature": "ENST00000646693.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "NM_003072.5",
          "protein_id": "NP_003063.2",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1647,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000344626.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003072.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000344626.10",
          "protein_id": "ENSP00000343896.4",
          "transcript_support_level": 1,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1647,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_003072.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000344626.10"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000643549.1",
          "protein_id": "ENSP00000493975.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1649,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4950,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000643549.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000541122.6",
          "protein_id": "ENSP00000445036.2",
          "transcript_support_level": 5,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1617,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4854,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541122.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000643296.1",
          "protein_id": "ENSP00000496635.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1617,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4854,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000643296.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000644737.1",
          "protein_id": "ENSP00000495548.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1617,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4854,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000644737.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000589677.5",
          "protein_id": "ENSP00000464778.1",
          "transcript_support_level": 5,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1616,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000589677.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.442C>G",
          "hgvs_p": "p.Pro148Ala",
          "transcript": "ENST00000643995.1",
          "protein_id": "ENSP00000496004.1",
          "transcript_support_level": null,
          "aa_start": 148,
          "aa_end": null,
          "aa_length": 1454,
          "cds_start": 442,
          "cds_end": null,
          "cds_length": 4365,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000643995.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "NM_001128849.3",
          "protein_id": "NP_001122321.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1679,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5040,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001128849.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000711079.1",
          "protein_id": "ENSP00000518564.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1679,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5040,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000711079.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000896343.1",
          "protein_id": "ENSP00000566402.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1679,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5040,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000896343.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000924728.1",
          "protein_id": "ENSP00000594787.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1669,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 5010,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000924728.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000924742.1",
          "protein_id": "ENSP00000594801.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1649,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4950,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000924742.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000924719.1",
          "protein_id": "ENSP00000594778.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1648,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4947,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000924719.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000924738.1",
          "protein_id": "ENSP00000594797.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1648,
          "cds_start": 1030,
          "cds_end": null,
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          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000924738.1"
        },
        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "NM_001128844.3",
          "protein_id": "NP_001122316.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1647,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4944,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001128844.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000429416.8",
          "protein_id": "ENSP00000395654.1",
          "transcript_support_level": 2,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1647,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000429416.8"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMARCA4",
          "gene_hgnc_id": 11100,
          "hgvs_c": "c.1030C>G",
          "hgvs_p": "p.Pro344Ala",
          "transcript": "ENST00000924715.1",
          "protein_id": "ENSP00000594774.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 1647,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 4944,
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      "gnomad_exomes_homalt": null,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.192815899848938,
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "bayesdelnoaf_score": -0.3,
      "bayesdelnoaf_prediction": "Benign",
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      "acmg_score": 0,
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          "score": 0,
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001128849.3",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}