← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-33387892-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=33387892&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 33387892,
"ref": "C",
"alt": "T",
"effect": "missense_variant,splice_region_variant",
"transcript": "ENST00000244137.12",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1342G>A",
"hgvs_p": "p.Gly448Arg",
"transcript": "NM_000285.4",
"protein_id": "NP_000276.2",
"transcript_support_level": null,
"aa_start": 448,
"aa_end": null,
"aa_length": 493,
"cds_start": 1342,
"cds_end": null,
"cds_length": 1482,
"cdna_start": 1373,
"cdna_end": null,
"cdna_length": 1907,
"mane_select": "ENST00000244137.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1342G>A",
"hgvs_p": "p.Gly448Arg",
"transcript": "ENST00000244137.12",
"protein_id": "ENSP00000244137.5",
"transcript_support_level": 1,
"aa_start": 448,
"aa_end": null,
"aa_length": 493,
"cds_start": 1342,
"cds_end": null,
"cds_length": 1482,
"cdna_start": 1373,
"cdna_end": null,
"cdna_length": 1907,
"mane_select": "NM_000285.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1342G>A",
"hgvs_p": "p.Gly448Arg",
"transcript": "ENST00000651901.2",
"protein_id": "ENSP00000498922.2",
"transcript_support_level": null,
"aa_start": 448,
"aa_end": null,
"aa_length": 523,
"cds_start": 1342,
"cds_end": null,
"cds_length": 1572,
"cdna_start": 1373,
"cdna_end": null,
"cdna_length": 1839,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1408G>A",
"hgvs_p": "p.Gly470Arg",
"transcript": "ENST00000588328.7",
"protein_id": "ENSP00000468516.4",
"transcript_support_level": 3,
"aa_start": 470,
"aa_end": null,
"aa_length": 515,
"cds_start": 1408,
"cds_end": null,
"cds_length": 1548,
"cdna_start": 1439,
"cdna_end": null,
"cdna_length": 1971,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1393G>A",
"hgvs_p": "p.Gly465Arg",
"transcript": "ENST00000698360.1",
"protein_id": "ENSP00000513683.1",
"transcript_support_level": null,
"aa_start": 465,
"aa_end": null,
"aa_length": 510,
"cds_start": 1393,
"cds_end": null,
"cds_length": 1533,
"cdna_start": 1430,
"cdna_end": null,
"cdna_length": 1949,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1384G>A",
"hgvs_p": "p.Gly462Arg",
"transcript": "ENST00000698427.1",
"protein_id": "ENSP00000513714.1",
"transcript_support_level": null,
"aa_start": 462,
"aa_end": null,
"aa_length": 507,
"cds_start": 1384,
"cds_end": null,
"cds_length": 1524,
"cdna_start": 1473,
"cdna_end": null,
"cdna_length": 2002,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1297G>A",
"hgvs_p": "p.Gly433Arg",
"transcript": "ENST00000698359.1",
"protein_id": "ENSP00000513682.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 478,
"cds_start": 1297,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 1328,
"cdna_end": null,
"cdna_length": 1847,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1219G>A",
"hgvs_p": "p.Gly407Arg",
"transcript": "NM_001166056.2",
"protein_id": "NP_001159528.1",
"transcript_support_level": null,
"aa_start": 407,
"aa_end": null,
"aa_length": 452,
"cds_start": 1219,
"cds_end": null,
"cds_length": 1359,
"cdna_start": 1250,
"cdna_end": null,
"cdna_length": 1784,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1219G>A",
"hgvs_p": "p.Gly407Arg",
"transcript": "ENST00000397032.8",
"protein_id": "ENSP00000380226.3",
"transcript_support_level": 2,
"aa_start": 407,
"aa_end": null,
"aa_length": 452,
"cds_start": 1219,
"cds_end": null,
"cds_length": 1359,
"cdna_start": 1250,
"cdna_end": null,
"cdna_length": 1754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1150G>A",
"hgvs_p": "p.Gly384Arg",
"transcript": "NM_001166057.2",
"protein_id": "NP_001159529.1",
"transcript_support_level": null,
"aa_start": 384,
"aa_end": null,
"aa_length": 429,
"cds_start": 1150,
"cds_end": null,
"cds_length": 1290,
"cdna_start": 1181,
"cdna_end": null,
"cdna_length": 1715,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1150G>A",
"hgvs_p": "p.Gly384Arg",
"transcript": "ENST00000436370.7",
"protein_id": "ENSP00000391890.2",
"transcript_support_level": 2,
"aa_start": 384,
"aa_end": null,
"aa_length": 429,
"cds_start": 1150,
"cds_end": null,
"cds_length": 1290,
"cdna_start": 1178,
"cdna_end": null,
"cdna_length": 1638,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1150G>A",
"hgvs_p": "p.Gly384Arg",
"transcript": "ENST00000698432.1",
"protein_id": "ENSP00000513718.1",
"transcript_support_level": null,
"aa_start": 384,
"aa_end": null,
"aa_length": 429,
"cds_start": 1150,
"cds_end": null,
"cds_length": 1290,
"cdna_start": 1151,
"cdna_end": null,
"cdna_length": 1670,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1021G>A",
"hgvs_p": "p.Gly341Arg",
"transcript": "ENST00000698426.1",
"protein_id": "ENSP00000513713.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 386,
"cds_start": 1021,
"cds_end": null,
"cds_length": 1161,
"cdna_start": 1550,
"cdna_end": null,
"cdna_length": 2079,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1021G>A",
"hgvs_p": "p.Gly341Arg",
"transcript": "ENST00000698428.1",
"protein_id": "ENSP00000513715.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 386,
"cds_start": 1021,
"cds_end": null,
"cds_length": 1161,
"cdna_start": 1445,
"cdna_end": null,
"cdna_length": 1974,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.1458G>A",
"hgvs_p": "p.Ala486Ala",
"transcript": "ENST00000698361.1",
"protein_id": "ENSP00000513684.1",
"transcript_support_level": null,
"aa_start": 486,
"aa_end": null,
"aa_length": 495,
"cds_start": 1458,
"cds_end": null,
"cds_length": 1488,
"cdna_start": 1521,
"cdna_end": null,
"cdna_length": 2040,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.414G>A",
"hgvs_p": null,
"transcript": "ENST00000591968.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 943,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.1229G>A",
"hgvs_p": null,
"transcript": "ENST00000593085.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1763,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.1225G>A",
"hgvs_p": null,
"transcript": "ENST00000698429.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1744,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.*1501G>A",
"hgvs_p": null,
"transcript": "ENST00000698430.1",
"protein_id": "ENSP00000513716.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2111,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.*797G>A",
"hgvs_p": null,
"transcript": "ENST00000698431.1",
"protein_id": "ENSP00000513717.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1598,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.804G>A",
"hgvs_p": null,
"transcript": "ENST00000698433.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 939,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "c.*71G>A",
"hgvs_p": null,
"transcript": "ENST00000698362.1",
"protein_id": "ENSP00000513685.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 361,
"cds_start": -4,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2114,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.*1501G>A",
"hgvs_p": null,
"transcript": "ENST00000698430.1",
"protein_id": "ENSP00000513716.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2111,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.*797G>A",
"hgvs_p": null,
"transcript": "ENST00000698431.1",
"protein_id": "ENSP00000513717.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1598,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"hgvs_c": "n.*67G>A",
"hgvs_p": null,
"transcript": "ENST00000590731.6",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 950,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "PEPD",
"gene_hgnc_id": 8840,
"dbsnp": "rs121917724",
"frequency_reference_population": 0.00003644012,
"hom_count_reference_population": 0,
"allele_count_reference_population": 57,
"gnomad_exomes_af": 0.0000361226,
"gnomad_genomes_af": 0.000039383,
"gnomad_exomes_ac": 51,
"gnomad_genomes_ac": 6,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9914599657058716,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.7379999756813049,
"splice_prediction_selected": "Pathogenic",
"splice_source_selected": "dbscSNV1_RF",
"revel_score": 0.83,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9795,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.39,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 5.669,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": 0.890729547265288,
"dbscsnv_ada_prediction": "Benign",
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 14,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PM2,PP3_Strong,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 14,
"benign_score": 0,
"pathogenic_score": 14,
"criteria": [
"PM2",
"PP3_Strong",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "ENST00000244137.12",
"gene_symbol": "PEPD",
"hgnc_id": 8840,
"effects": [
"missense_variant",
"splice_region_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1342G>A",
"hgvs_p": "p.Gly448Arg"
}
],
"clinvar_disease": "Prolidase deficiency,not provided",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:5 LP:1",
"phenotype_combined": "Prolidase deficiency|not provided",
"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}