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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-40622510-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=40622510&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 21,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BA1"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "LTBP4",
"hgnc_id": 6717,
"hgvs_c": "c.3528G>A",
"hgvs_p": "p.Val1176Val",
"inheritance_mode": "AR",
"pathogenic_score": 0,
"score": -21,
"transcript": "NM_001042544.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BA1",
"acmg_score": -21,
"allele_count_reference_population": 81171,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.76,
"chr": "19",
"clinvar_classification": "Benign",
"clinvar_disease": "LTBP4-related disorder,not provided,not specified",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:5",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.7599999904632568,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1557,
"aa_ref": "V",
"aa_start": 1109,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4961,
"cdna_start": 3346,
"cds_end": null,
"cds_length": 4674,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "NM_001042545.2",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000396819.8",
"protein_coding": true,
"protein_id": "NP_001036010.1",
"strand": true,
"transcript": "NM_001042545.2",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1557,
"aa_ref": "V",
"aa_start": 1109,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4961,
"cdna_start": 3346,
"cds_end": null,
"cds_length": 4674,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000396819.8",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001042545.2",
"protein_coding": true,
"protein_id": "ENSP00000380031.5",
"strand": true,
"transcript": "ENST00000396819.8",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1624,
"aa_ref": "V",
"aa_start": 1176,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4948,
"cdna_start": 3528,
"cds_end": null,
"cds_length": 4875,
"cds_start": 3528,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000308370.11",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3528G>A",
"hgvs_p": "p.Val1176Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000311905.8",
"strand": true,
"transcript": "ENST00000308370.11",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1587,
"aa_ref": "V",
"aa_start": 1139,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5032,
"cdna_start": 3417,
"cds_end": null,
"cds_length": 4764,
"cds_start": 3417,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000204005.13",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3417G>A",
"hgvs_p": "p.Val1139Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000204005.10",
"strand": true,
"transcript": "ENST00000204005.13",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 671,
"aa_ref": "V",
"aa_start": 321,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2019,
"cdna_start": 964,
"cds_end": null,
"cds_length": 2018,
"cds_start": 963,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000601032.5",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.963G>A",
"hgvs_p": "p.Val321Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000470824.1",
"strand": true,
"transcript": "ENST00000601032.5",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1624,
"aa_ref": "V",
"aa_start": 1176,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5145,
"cdna_start": 3528,
"cds_end": null,
"cds_length": 4875,
"cds_start": 3528,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "NM_001042544.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3528G>A",
"hgvs_p": "p.Val1176Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001036009.1",
"strand": true,
"transcript": "NM_001042544.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1587,
"aa_ref": "V",
"aa_start": 1139,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5034,
"cdna_start": 3417,
"cds_end": null,
"cds_length": 4764,
"cds_start": 3417,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "NM_003573.2",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3417G>A",
"hgvs_p": "p.Val1139Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_003564.2",
"strand": true,
"transcript": "NM_003573.2",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1565,
"aa_ref": "V",
"aa_start": 1117,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4974,
"cdna_start": 3360,
"cds_end": null,
"cds_length": 4698,
"cds_start": 3351,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000969228.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3351G>A",
"hgvs_p": "p.Val1117Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639287.1",
"strand": true,
"transcript": "ENST00000969228.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1533,
"aa_ref": "V",
"aa_start": 1109,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4912,
"cdna_start": 3367,
"cds_end": null,
"cds_length": 4602,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 29,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000908835.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578894.1",
"strand": true,
"transcript": "ENST00000908835.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1515,
"aa_ref": "V",
"aa_start": 1067,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4858,
"cdna_start": 3241,
"cds_end": null,
"cds_length": 4548,
"cds_start": 3201,
"consequences": [
"synonymous_variant"
],
"exon_count": 29,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "ENST00000908836.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3201G>A",
"hgvs_p": "p.Val1067Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578895.1",
"strand": true,
"transcript": "ENST00000908836.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1508,
"aa_ref": "V",
"aa_start": 1109,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4818,
"cdna_start": 3348,
"cds_end": null,
"cds_length": 4527,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 29,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000969223.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639282.1",
"strand": true,
"transcript": "ENST00000969223.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 1478,
"aa_ref": "V",
"aa_start": 1109,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4711,
"cdna_start": 3333,
"cds_end": null,
"cds_length": 4437,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000908839.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578898.1",
"strand": true,
"transcript": "ENST00000908839.1",
"transcript_support_level": null
},
{
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"aa_length": 1447,
"aa_ref": "V",
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"biotype": "protein_coding",
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"cdna_end": null,
"cdna_length": 4665,
"cdna_start": 3122,
"cds_end": null,
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"cds_start": 3069,
"consequences": [
"synonymous_variant"
],
"exon_count": 27,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000908834.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3069G>A",
"hgvs_p": "p.Val1023Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578893.1",
"strand": true,
"transcript": "ENST00000908834.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_length": 1442,
"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4603,
"cdna_start": 3333,
"cds_end": null,
"cds_length": 4329,
"cds_start": 3327,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000969230.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3327G>A",
"hgvs_p": "p.Val1109Val",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639289.1",
"strand": true,
"transcript": "ENST00000969230.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4526,
"cdna_start": 2983,
"cds_end": null,
"cds_length": 4239,
"cds_start": 2964,
"consequences": [
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],
"exon_count": 26,
"exon_rank": 20,
"exon_rank_end": null,
"feature": "ENST00000908837.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.2964G>A",
"hgvs_p": "p.Val988Val",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578896.1",
"strand": true,
"transcript": "ENST00000908837.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_length": 1405,
"aa_ref": "V",
"aa_start": 981,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4513,
"cdna_start": 2971,
"cds_end": null,
"cds_length": 4218,
"cds_start": 2943,
"consequences": [
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],
"exon_count": 26,
"exon_rank": 20,
"exon_rank_end": null,
"feature": "ENST00000969221.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.2943G>A",
"hgvs_p": "p.Val981Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639280.1",
"strand": true,
"transcript": "ENST00000969221.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_length": 1366,
"aa_ref": "V",
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"biotype": "protein_coding",
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"cdna_end": null,
"cdna_length": 4394,
"cdna_start": 2852,
"cds_end": null,
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"cds_start": 2826,
"consequences": [
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],
"exon_count": 26,
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"feature": "ENST00000969222.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.2826G>A",
"hgvs_p": "p.Val942Val",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639281.1",
"strand": true,
"transcript": "ENST00000969222.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_length": 1355,
"aa_ref": "V",
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"biotype": "protein_coding",
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"cdna_end": null,
"cdna_length": 4354,
"cdna_start": 3088,
"cds_end": null,
"cds_length": 4068,
"cds_start": 3069,
"consequences": [
"synonymous_variant"
],
"exon_count": 25,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000969226.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3069G>A",
"hgvs_p": "p.Val1023Val",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000639285.1",
"strand": true,
"transcript": "ENST00000969226.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
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"aa_length": 956,
"aa_ref": "V",
"aa_start": 508,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3140,
"cdna_start": 1526,
"cds_end": null,
"cds_length": 2871,
"cds_start": 1524,
"consequences": [
"synonymous_variant"
],
"exon_count": 19,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000243562.13",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.1524G>A",
"hgvs_p": "p.Val508Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000243562.10",
"strand": true,
"transcript": "ENST00000243562.13",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1468,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4694,
"cdna_start": null,
"cds_end": null,
"cds_length": 4407,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 29,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000908838.1",
"gene_hgnc_id": 6717,
"gene_symbol": "LTBP4",
"hgvs_c": "c.3218-440G>A",
"hgvs_p": null,
"intron_rank": 22,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000578897.1",
"strand": true,
"transcript": "ENST00000908838.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1401,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4480,
"cdna_start": null,
"cds_end": null,
"cds_length": 4206,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 27,
"exon_rank": null,
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