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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-44885967-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=44885967&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 44885967,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000252483.10",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NECTIN2",
"gene_hgnc_id": 9707,
"hgvs_c": "c.1227G>A",
"hgvs_p": "p.Pro409Pro",
"transcript": "NM_001042724.2",
"protein_id": "NP_001036189.1",
"transcript_support_level": null,
"aa_start": 409,
"aa_end": null,
"aa_length": 538,
"cds_start": 1227,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1456,
"cdna_end": null,
"cdna_length": 2690,
"mane_select": "ENST00000252483.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NECTIN2",
"gene_hgnc_id": 9707,
"hgvs_c": "c.1227G>A",
"hgvs_p": "p.Pro409Pro",
"transcript": "ENST00000252483.10",
"protein_id": "ENSP00000252483.4",
"transcript_support_level": 1,
"aa_start": 409,
"aa_end": null,
"aa_length": 538,
"cds_start": 1227,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1456,
"cdna_end": null,
"cdna_length": 2690,
"mane_select": "NM_001042724.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NECTIN2",
"gene_hgnc_id": 9707,
"hgvs_c": "c.27-2143G>A",
"hgvs_p": null,
"transcript": "ENST00000592018.1",
"protein_id": "ENSP00000468305.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 53,
"cds_start": -4,
"cds_end": null,
"cds_length": 162,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 812,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000267282",
"gene_hgnc_id": 56209,
"hgvs_c": "n.161-3629C>T",
"hgvs_p": null,
"transcript": "ENST00000585408.2",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 514,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000267282",
"gene_hgnc_id": 56209,
"hgvs_c": "n.156-3629C>T",
"hgvs_p": null,
"transcript": "ENST00000787383.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 514,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "NECTIN2",
"gene_hgnc_id": 9707,
"dbsnp": "rs283814",
"frequency_reference_population": 0.066028714,
"hom_count_reference_population": 4014,
"allele_count_reference_population": 105820,
"gnomad_exomes_af": 0.0675895,
"gnomad_genomes_af": 0.0511569,
"gnomad_exomes_ac": 98033,
"gnomad_genomes_ac": 7787,
"gnomad_exomes_homalt": 3737,
"gnomad_genomes_homalt": 277,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9700000286102295,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.97,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -3.527,
"phylop100way_prediction": "Benign",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP7,BA1",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP7",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000252483.10",
"gene_symbol": "NECTIN2",
"hgnc_id": 9707,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1227G>A",
"hgvs_p": "p.Pro409Pro"
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000585408.2",
"gene_symbol": "ENSG00000267282",
"hgnc_id": 56209,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.161-3629C>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}